Miyakogusa Predicted Gene
- Lj2g3v0486960.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0486960.1 Non Chatacterized Hit- tr|C0PJ22|C0PJ22_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,64.29,0.0000000000005,Clp_N,Clp, N-terminal; no
description,Double Clp-N motif; Double Clp-N motif,NULL; seg,NULL;
SUBFAMI,CUFF.34634.1
(256 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25370.1 | Symbols: | Double Clp-N motif protein | chr4:1297... 266 1e-71
AT4G12060.1 | Symbols: | Double Clp-N motif protein | chr4:7228... 223 9e-59
AT5G50920.1 | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | C... 56 3e-08
AT3G48870.2 | Symbols: HSP93-III | Clp ATPase | chr3:18122363-18... 56 3e-08
AT3G48870.1 | Symbols: ATCLPC, ATHSP93-III, HSP93-III | Clp ATPa... 56 3e-08
AT3G45450.1 | Symbols: | Double Clp-N motif-containing P-loop n... 50 1e-06
>AT4G25370.1 | Symbols: | Double Clp-N motif protein |
chr4:12972747-12974580 FORWARD LENGTH=238
Length = 238
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/205 (63%), Positives = 165/205 (80%), Gaps = 3/205 (1%)
Query: 51 LPLTS-LFGTRITLHRPASSRSLHLNTNCRATSATVSFSLPTPKPQPDAPEKVPKWSARS 109
+PLTS L G ++ +P S R C TSA+ ++P +P+ + +K+PKWSAR+
Sbjct: 33 IPLTSSLLGKKLLATQP-SHRCFVPKLRC-LTSASTVLNVPIAQPENGSSDKIPKWSARA 90
Query: 110 IKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDETVELLGK 169
IKS AMGELEARKLKYP+TGTEA+LMGILVEGTS AKFLR NG+TLFKVRDET+ LLGK
Sbjct: 91 IKSLAMGELEARKLKYPSTGTEAILMGILVEGTSTVAKFLRGNGVTLFKVRDETLSLLGK 150
Query: 170 SDMYFFSPEHPPLTEPARKALDWAIDEKLKSGGEGEINVAHLLLGIWSQKESAGQQILAG 229
SDMYFFSPEHPPLTEPA+KA+ WAIDEK KS +GE+ A+LLLG+WSQK+SAG+QIL
Sbjct: 151 SDMYFFSPEHPPLTEPAQKAIAWAIDEKNKSDVDGELTTAYLLLGVWSQKDSAGRQILEK 210
Query: 230 LGFNDEKAKELAKSVDGDIDLSYRR 254
LGFN++KAKE+ KS++ D+DLS+++
Sbjct: 211 LGFNEDKAKEVEKSMNEDVDLSFKK 235
>AT4G12060.1 | Symbols: | Double Clp-N motif protein |
chr4:7228269-7229898 REVERSE LENGTH=241
Length = 241
Score = 223 bits (568), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 119/193 (61%), Positives = 144/193 (74%), Gaps = 4/193 (2%)
Query: 49 CTLPLTSLFGTRITLHRPASSRSLHLNTNCRATSATVSFSLPTPKPQPDAPE-KVPKWSA 107
T P + + ++L P S+ L N R + +S SLPT P + K PKWS
Sbjct: 40 LTNPWLGVVDSSLSLTSPVSA--LQTNRPRRIHKSAIS-SLPTANPDLVVSDAKKPKWSW 96
Query: 108 RSIKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDETVELL 167
R+IKSFAMGELEARKLKYP TGTEALLMGIL+EGTS +KFLRAN I L+KVR+ETV+LL
Sbjct: 97 RAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTSFTSKFLRANKIMLYKVREETVKLL 156
Query: 168 GKSDMYFFSPEHPPLTEPARKALDWAIDEKLKSGGEGEINVAHLLLGIWSQKESAGQQIL 227
GK+DMYFFSPEHPPLTE A++ALD A+D+ LK+GG GE+ AH+LLGIWS+ ES G +IL
Sbjct: 157 GKADMYFFSPEHPPLTEDAQRALDSALDQNLKAGGIGEVMPAHILLGIWSEVESPGHKIL 216
Query: 228 AGLGFNDEKAKEL 240
A LGF DEK+KEL
Sbjct: 217 ATLGFTDEKSKEL 229
>AT5G50920.1 | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC
homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929
Length = 929
Score = 55.8 bits (133), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 104 KWSARSIKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDET 163
+++ ++IK + + EAR+L + GTE +L+G++ EGT AAK L++ GI L R E
Sbjct: 97 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 156
Query: 164 VELLGKSDMYFFSPEHPPLTEPARKALDWAIDEKLKSG 201
+++G+ F P T A++ L+ +++E + G
Sbjct: 157 EKIIGRGSG--FVAVEIPFTPRAKRVLELSLEEARQLG 192
>AT3G48870.2 | Symbols: HSP93-III | Clp ATPase |
chr3:18122363-18125915 REVERSE LENGTH=921
Length = 921
Score = 55.8 bits (133), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 85 VSFSLPTPKPQPDAPEKVPK-----WSARSIKSFAMGELEARKLKYPTTGTEALLMGILV 139
V + L + A VPK ++ ++IK + + EAR+L + GTE +L+G++
Sbjct: 62 VKYKLAKSSGREKASRCVPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIG 121
Query: 140 EGTSKAAKFLRANGITLFKVRDETVELLGKSDMYFFSPEHPPLTEPARKALDWAIDEKLK 199
EGT AAK L++ GI L R E +++G+ F P T A++ L+ +++E +
Sbjct: 122 EGTGIAAKVLKSMGINLKDSRVEVEKIIGRGSG--FVAVEIPFTPRAKRVLELSLEEARQ 179
Query: 200 SG 201
G
Sbjct: 180 LG 181
>AT3G48870.1 | Symbols: ATCLPC, ATHSP93-III, HSP93-III | Clp ATPase
| chr3:18122363-18126008 REVERSE LENGTH=952
Length = 952
Score = 55.8 bits (133), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 85 VSFSLPTPKPQPDAPEKVPK-----WSARSIKSFAMGELEARKLKYPTTGTEALLMGILV 139
V + L + A VPK ++ ++IK + + EAR+L + GTE +L+G++
Sbjct: 93 VKYKLAKSSGREKASRCVPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIG 152
Query: 140 EGTSKAAKFLRANGITLFKVRDETVELLGKSDMYFFSPEHPPLTEPARKALDWAIDEKLK 199
EGT AAK L++ GI L R E +++G+ F P T A++ L+ +++E +
Sbjct: 153 EGTGIAAKVLKSMGINLKDSRVEVEKIIGRGSG--FVAVEIPFTPRAKRVLELSLEEARQ 210
Query: 200 SG 201
G
Sbjct: 211 LG 212
>AT3G45450.1 | Symbols: | Double Clp-N motif-containing P-loop
nucleoside triphosphate hydrolases superfamily protein |
chr3:16673146-16674880 FORWARD LENGTH=341
Length = 341
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 104 KWSARSIKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDET 163
+++ ++IK + + EAR+L Y GTE +L+ ++ EGT AAK L++ GI L R E
Sbjct: 4 RFTEKAIKVITLAQEEARRLGYNFFGTEHILLSLIGEGTGIAAKVLKSMGINLKDARVEV 63
Query: 164 VELLGKSDMYFF 175
+++G+ +
Sbjct: 64 EKIIGRGSGFVV 75