Miyakogusa Predicted Gene

Lj2g3v0463790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0463790.1 Non Chatacterized Hit- tr|D7MG09|D7MG09_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,42.75,1e-18,no
description,Helix-loop-helix domain; coiled-coil,NULL; helix loop
helix domain,Helix-loop-helix d,CUFF.34620.1
         (206 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51790.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   122   2e-28
AT4G25410.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   117   7e-27
AT5G51780.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   116   1e-26
AT4G25400.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   109   2e-24
AT1G62975.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   108   2e-24
AT1G12540.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   105   2e-23

>AT5G51790.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:21039762-21040594 FORWARD
           LENGTH=204
          Length = 204

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 9/176 (5%)

Query: 20  KKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNKVKQLQ 79
           KK +HR  E+QRRQEM  L  +LRS LPL+YIKGKR+ SDHVN A+++I   Q ++K L 
Sbjct: 27  KKLLHRNIERQRRQEMAILFASLRSQLPLKYIKGKRAMSDHVNGAVSFIKDTQTRIKDLS 86

Query: 80  YKRDKLMKEVPNLHTTTGPENECSPTHLQPF-VIVHPFPGGVEIVCSYSLKC---VFPLS 135
            +RD+L +E+ +  + TG  +    +  +P  V+V P   G E+V S SL      +PLS
Sbjct: 87  ARRDELKREIGDPTSLTGSGSGSGSSRSEPASVMVQPCVSGFEVVVS-SLASGLEAWPLS 145

Query: 136 RVLDILLKEGLDVVSSTSTKIDERFIHTIISEDPSHLNILDTDYSDQLQRKLTEAI 191
           RVL++L  +GL+V+SS + +++ER ++TI  E    +N  D      LQ+KL E +
Sbjct: 146 RVLEVLHGQGLEVISSLTARVNERLMYTIQVE----VNSFDCFDLAWLQQKLIEQL 197


>AT4G25410.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:12985772-12987149 FORWARD
           LENGTH=230
          Length = 230

 Score =  117 bits (292), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 113/189 (59%), Gaps = 18/189 (9%)

Query: 24  HRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNKVKQLQYKRD 83
           HR+ E+QRRQEM  L  TLR+ LPL+YIKGKR+ SDHVN A+N+I   + ++K+L  +RD
Sbjct: 47  HRDIERQRRQEMATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKELSARRD 106

Query: 84  KLMKEV-------PNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSLKC--VFPL 134
           +L +E        P+   T     +  P      V+V P   G+E+V S +       PL
Sbjct: 107 ELSRETGQGYKSNPDPGKTGSDVGKSEPA----TVMVQPHVSGLEVVVSSNSSGPEALPL 162

Query: 135 SRVLDILLKEGLDVVSSTSTKIDERFIHTIISEDPSHLNILDTDYSDQLQRKLTE-AISS 193
           S+VL+ + ++GL+V+SS +T++++R +HTI  E  S    +D  +   LQ+KL E  I S
Sbjct: 163 SKVLETIQEKGLEVMSSFTTRVNDRLMHTIQVEVNS-FGCIDLLW---LQQKLVEDLILS 218

Query: 194 TGVGETLPE 202
           TG  ++L E
Sbjct: 219 TGKNQSLLE 227


>AT5G51780.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:21034879-21036446 FORWARD
           LENGTH=174
          Length = 174

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 97/156 (62%), Gaps = 12/156 (7%)

Query: 20  KKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNKVKQLQ 79
           +K +HRETE+QRRQEM  L  +LRSLLPL +IKGKRSTSD VNEA+NYI +LQ K+K+L 
Sbjct: 2   EKMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELS 61

Query: 80  YKRDKLMKEVPNLHTTTGPEN-----ECSPTHLQPFVIVHPFPGGVEIVCSYSLKCVFP- 133
            +RD LM  V +  +  G  N     +      +  V+V     GVEI+ S   +C    
Sbjct: 62  VRRDDLM--VLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSS--RCCGGQ 117

Query: 134 --LSRVLDILLKEGLDVVSSTSTKIDERFIHTIISE 167
              S VL +L + GL +++S S+ +D+R ++TI +E
Sbjct: 118 PRFSSVLQVLSEYGLCLLNSISSIVDDRLVYTIQAE 153


>AT4G25400.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:12981295-12982335 FORWARD
           LENGTH=163
          Length = 163

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 88/148 (59%), Gaps = 6/148 (4%)

Query: 20  KKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNKVKQLQ 79
           +K +H+E EK+RRQEM  L  +LRSLLPLE+I+GKRSTSD V  A+NYI++LQ  +K + 
Sbjct: 2   EKLVHKEIEKRRRQEMASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDIN 61

Query: 80  YKRDKLMKEVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSLKCVFPLSRVLD 139
            KRD L   V     +    NE     +   V++ P   G+EIV S       P S VL 
Sbjct: 62  SKRDDL---VLLSGRSFRSSNEQEWNEISNHVVIRPCLVGIEIVLSI---LQTPFSSVLQ 115

Query: 140 ILLKEGLDVVSSTSTKIDERFIHTIISE 167
           +L + GL V+    + +++R IHT+ +E
Sbjct: 116 VLREHGLYVLGYICSSVNDRLIHTLQAE 143


>AT1G62975.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:23328901-23330522 FORWARD
           LENGTH=259
          Length = 259

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 102/187 (54%), Gaps = 31/187 (16%)

Query: 16  DDENKKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNKV 75
           D E+KK  HR+ E+QRRQE+  L   LR+LLP +YI+GKRSTSDH+ +A+NYI  LQ K+
Sbjct: 70  DRESKKMKHRDIERQRRQEVSSLFKRLRTLLPFQYIQGKRSTSDHIVQAVNYIKDLQIKI 129

Query: 76  KQLQYKRDKLMKEVPNLHTTTGPENE-------------------CSPTHLQPFVIVHPF 116
           K+L  KR+++ K +    TT     E                       H+   V+V P 
Sbjct: 130 KELNEKRNRVKKVISATTTTHSAIEECTSSLSSSAASTLSSSCSCVGDKHIT--VVVTPC 187

Query: 117 PGGVEIVCSYSL----KCVFPLSRVLDILLKEG-LDVVSSTSTKIDERFIHTIIS--EDP 169
             GVEI+ S  L     C   LS VL +L +E    VVS  S +  +RF+HTI+S  ED 
Sbjct: 188 LVGVEIIISCCLGRNKSC---LSSVLQMLAQEQRFSVVSCLSARRQQRFMHTIVSQVEDG 244

Query: 170 SHLNILD 176
             +NIL+
Sbjct: 245 KQINILE 251


>AT1G12540.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:4272960-4273980 FORWARD
           LENGTH=257
          Length = 257

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 103/182 (56%), Gaps = 14/182 (7%)

Query: 16  DDE--NKKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQN 73
           DDE  NK+  H+E E+QRRQE   L   LR LLP +YIKGKRS++DHV EA+NYI  LQ 
Sbjct: 69  DDEPKNKRAKHKELERQRRQENTSLFKILRYLLPSQYIKGKRSSADHVLEAVNYIKDLQK 128

Query: 74  KVKQLQYKRDKLMKEVPN------LHTTTGPENECSPT-HLQPFVIVHPFPGGVEIVCSY 126
           K+K++  KRD++ + + +          +   + CS        V+V P   G+EIV S 
Sbjct: 129 KIKEVSEKRDRIKRSITHPSSRGEFSIRSLASSTCSCVGDTNIAVVVRPCLIGLEIVVSC 188

Query: 127 SLKCVFPLSRVLDILLKEG-LDVVSSTSTKIDERFIHTIISEDPSHLNILDTDYSDQLQR 185
             +    LS VL +L +E   ++VS  ST++ + FIHTI SE    + +    Y  +LQ 
Sbjct: 189 CNRHESCLSSVLQLLAQEQCFNIVSCISTRLHQGFIHTIASEVEEGIEV----YFSELQE 244

Query: 186 KL 187
           K+
Sbjct: 245 KI 246