Miyakogusa Predicted Gene

Lj2g3v0435530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0435530.1 Non Chatacterized Hit- tr|C4JAB5|C4JAB5_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,31.12,1e-18,SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; LIM_bind,NULL;
seg,NULL,NODE_8064_length_1370_cov_248.719711.path1.1
         (436 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62090.2 | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938...   313   2e-85
AT5G62090.1 | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938...   313   2e-85
AT4G25515.1 | Symbols: SLK3 | SEUSS-like 3 | chr4:13028219-13031...   271   5e-73
AT4G25520.1 | Symbols: SLK1 | SEUSS-like 1 | chr4:13032450-13035...   262   3e-70
AT1G43850.2 | Symbols: SEU | SEUSS transcriptional co-regulator ...   200   2e-51
AT1G43850.1 | Symbols: SEU | SEUSS transcriptional co-regulator ...   200   2e-51

>AT5G62090.2 | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938540
           REVERSE LENGTH=816
          Length = 816

 Score =  313 bits (801), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 161/246 (65%), Positives = 193/246 (78%), Gaps = 10/246 (4%)

Query: 1   MLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQL 60
           +LEY KAVQESVYE +RVVREG LRIIF+Q+LKILSWEFC RRHEELLPRRLVAPQVNQL
Sbjct: 408 VLEYGKAVQESVYEHIRVVREGHLRIIFSQELKILSWEFCTRRHEELLPRRLVAPQVNQL 467

Query: 61  VQVAQKCQSTIAESGSDGISQQDLQTNSNMVLTAGRHLAKSLELQSLNDLGFSKRYVRCL 120
           +QVA+KCQSTI +SGSDGI QQDLQ NSNMV+ AGR LAKSLE  SLNDLGFSKRYVRCL
Sbjct: 468 LQVAEKCQSTIDQSGSDGIHQQDLQANSNMVMAAGRQLAKSLESHSLNDLGFSKRYVRCL 527

Query: 121 QIAEVVNSMKDLIDFGREHKIGAIESLKTYPRHATAAKFXXXXXXXXXXLANVQGLPTDR 180
           QI+EVV+SMKD+IDF R+ K+G IE+LK+YP    A K           LA  +GLP DR
Sbjct: 528 QISEVVSSMKDMIDFCRDQKVGPIEALKSYPYRMKAGK---PQMQEMEQLAAARGLPPDR 584

Query: 181 NTLNKLIAM-HSGLXXXXXXXXXXXXRGALTGSAQ-AALALSNYQNILMRQNSMNS--NS 236
           N+LNKL+A+ +SG+            +G+L GSAQ AA AL+NYQ++LM+QN +NS  N+
Sbjct: 585 NSLNKLMALRNSGI---NIPMNNMSGQGSLPGSAQAAAFALTNYQSMLMKQNHLNSDLNN 641

Query: 237 GSLQRE 242
            ++Q+E
Sbjct: 642 TTIQQE 647


>AT5G62090.1 | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938540
           REVERSE LENGTH=816
          Length = 816

 Score =  313 bits (801), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 161/246 (65%), Positives = 193/246 (78%), Gaps = 10/246 (4%)

Query: 1   MLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQL 60
           +LEY KAVQESVYE +RVVREG LRIIF+Q+LKILSWEFC RRHEELLPRRLVAPQVNQL
Sbjct: 408 VLEYGKAVQESVYEHIRVVREGHLRIIFSQELKILSWEFCTRRHEELLPRRLVAPQVNQL 467

Query: 61  VQVAQKCQSTIAESGSDGISQQDLQTNSNMVLTAGRHLAKSLELQSLNDLGFSKRYVRCL 120
           +QVA+KCQSTI +SGSDGI QQDLQ NSNMV+ AGR LAKSLE  SLNDLGFSKRYVRCL
Sbjct: 468 LQVAEKCQSTIDQSGSDGIHQQDLQANSNMVMAAGRQLAKSLESHSLNDLGFSKRYVRCL 527

Query: 121 QIAEVVNSMKDLIDFGREHKIGAIESLKTYPRHATAAKFXXXXXXXXXXLANVQGLPTDR 180
           QI+EVV+SMKD+IDF R+ K+G IE+LK+YP    A K           LA  +GLP DR
Sbjct: 528 QISEVVSSMKDMIDFCRDQKVGPIEALKSYPYRMKAGK---PQMQEMEQLAAARGLPPDR 584

Query: 181 NTLNKLIAM-HSGLXXXXXXXXXXXXRGALTGSAQ-AALALSNYQNILMRQNSMNS--NS 236
           N+LNKL+A+ +SG+            +G+L GSAQ AA AL+NYQ++LM+QN +NS  N+
Sbjct: 585 NSLNKLMALRNSGI---NIPMNNMSGQGSLPGSAQAAAFALTNYQSMLMKQNHLNSDLNN 641

Query: 237 GSLQRE 242
            ++Q+E
Sbjct: 642 TTIQQE 647


>AT4G25515.1 | Symbols: SLK3 | SEUSS-like 3 | chr4:13028219-13031463
           FORWARD LENGTH=685
          Length = 685

 Score =  271 bits (694), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 143/247 (57%), Positives = 172/247 (69%), Gaps = 4/247 (1%)

Query: 1   MLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQL 60
           MLEY KAVQE+V+EQ RVVREG LRIIF+ DLKILSWEFCARRHEELL RRL+APQVNQL
Sbjct: 277 MLEYRKAVQETVHEQFRVVREGHLRIIFSPDLKILSWEFCARRHEELLLRRLIAPQVNQL 336

Query: 61  VQVAQKCQSTIAESGSDGISQQDLQTNSNMVLTAGRHLAKSLELQSLNDLGFSKRYVRCL 120
           +QVAQKCQSTI+ESGS G+SQQD+Q+NSNMVL AGR LAK +ELQSLNDLG+ KRY+R L
Sbjct: 337 LQVAQKCQSTISESGSQGVSQQDIQSNSNMVLGAGRQLAKFMELQSLNDLGYPKRYIRTL 396

Query: 121 QIAEVVNSMKDLIDFGREHKIGAIESLKTYPRHATAAKFXXXXXXXXXXLAN---VQGLP 177
           QI+EVV SMKDL++F  EHK+G +E LK         K             N   + G  
Sbjct: 397 QISEVVKSMKDLMNFTGEHKVGPLEGLKQLLEQTATVKLQRQKMQEMEQFGNSGAMSGPA 456

Query: 178 TDRNTLNKLIAMHSGLXXXXXXXXXXXXRGALTGSAQAALALSNYQNILMRQNSMNS-NS 236
             + TL+      S              RGA+ GS QA  AL+NYQ++L+RQN+MN+ NS
Sbjct: 457 QAQMTLSSGTMSGSTANNNSNNHHQIVGRGAMNGSPQATAALTNYQSMLIRQNAMNNQNS 516

Query: 237 GSLQREG 243
            +  +EG
Sbjct: 517 NTGNQEG 523


>AT4G25520.1 | Symbols: SLK1 | SEUSS-like 1 | chr4:13032450-13035803
           REVERSE LENGTH=748
          Length = 748

 Score =  262 bits (670), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/282 (52%), Positives = 175/282 (62%), Gaps = 39/282 (13%)

Query: 1   MLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQL 60
           MLEY KAVQE+V+EQ RVVREG LRIIF+QDLKILSWEFCARRHEELL RRL+APQVNQL
Sbjct: 305 MLEYRKAVQETVHEQFRVVREGHLRIIFSQDLKILSWEFCARRHEELLLRRLIAPQVNQL 364

Query: 61  VQVAQKCQSTIAESGSDGISQQDLQTNSNMVLTAGRHLAKSLELQSLNDLGFSKRYVRCL 120
           +QVAQKCQSTI+ESGS+G+SQQDLQ+NSNMVL AGR LAK +ELQSLNDLG+ KRY+R L
Sbjct: 365 LQVAQKCQSTISESGSEGVSQQDLQSNSNMVLGAGRQLAKFMELQSLNDLGYPKRYIRTL 424

Query: 121 QIAEVVNSMKDLIDFGREHKIGAIESLKTYPRHATAAKFXXXXXXXXXXLANVQGL--PT 178
           QI+EVV SMKDL++F  E KIG IE LK         K             N   +  P 
Sbjct: 425 QISEVVKSMKDLMNFTGEQKIGPIEGLKRLLEQTVTVKLQKQKMQEMEQFGNNGAINGPV 484

Query: 179 DRNTLNKLIAMHSGLXXXXXXXXXXXXRGALTG--------------------------- 211
               +     M+               RGA++G                           
Sbjct: 485 QAQMVLTSGTMNGSTGNNTNNHHQIVGRGAMSGPAEGQMVISSGTVSGATANNNSNNHNQ 544

Query: 212 ---------SAQAALALSNYQNILMRQNSMNS-NSGSLQREG 243
                    SAQAA AL+NYQ++LMRQN+MN+ NS + ++EG
Sbjct: 545 IVGRGAMNGSAQAAAALTNYQSMLMRQNAMNNPNSNTGKQEG 586


>AT1G43850.2 | Symbols: SEU | SEUSS transcriptional co-regulator |
           chr1:16617872-16621596 FORWARD LENGTH=877
          Length = 877

 Score =  200 bits (508), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/152 (63%), Positives = 119/152 (78%), Gaps = 1/152 (0%)

Query: 1   MLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQL 60
           +LEYAKA QESV+E LRVVR+GQLRI+F+ DLKI SWEFCARRHEEL+PRRL+ PQV+QL
Sbjct: 418 VLEYAKATQESVFEHLRVVRDGQLRIVFSPDLKIFSWEFCARRHEELIPRRLLIPQVSQL 477

Query: 61  VQVAQKCQSTIAESGSDGISQQDLQTNSNMVLTAGRHLAKSLELQSLNDLGFSKRYVRCL 120
              AQK Q     + +D  +  +LQ N NM + + R LAK+LE+  +NDLG++KRYVRCL
Sbjct: 478 GSAAQKYQQAAQNATTDS-ALPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCL 536

Query: 121 QIAEVVNSMKDLIDFGREHKIGAIESLKTYPR 152
           QI+EVVNSMKDLID+ RE + G IESL  +PR
Sbjct: 537 QISEVVNSMKDLIDYSRETRTGPIESLAKFPR 568


>AT1G43850.1 | Symbols: SEU | SEUSS transcriptional co-regulator |
           chr1:16617872-16621596 FORWARD LENGTH=877
          Length = 877

 Score =  200 bits (508), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/152 (63%), Positives = 119/152 (78%), Gaps = 1/152 (0%)

Query: 1   MLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQL 60
           +LEYAKA QESV+E LRVVR+GQLRI+F+ DLKI SWEFCARRHEEL+PRRL+ PQV+QL
Sbjct: 418 VLEYAKATQESVFEHLRVVRDGQLRIVFSPDLKIFSWEFCARRHEELIPRRLLIPQVSQL 477

Query: 61  VQVAQKCQSTIAESGSDGISQQDLQTNSNMVLTAGRHLAKSLELQSLNDLGFSKRYVRCL 120
              AQK Q     + +D  +  +LQ N NM + + R LAK+LE+  +NDLG++KRYVRCL
Sbjct: 478 GSAAQKYQQAAQNATTDS-ALPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCL 536

Query: 121 QIAEVVNSMKDLIDFGREHKIGAIESLKTYPR 152
           QI+EVVNSMKDLID+ RE + G IESL  +PR
Sbjct: 537 QISEVVNSMKDLIDYSRETRTGPIESLAKFPR 568