Miyakogusa Predicted Gene
- Lj2g3v0435510.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0435510.1 Non Chatacterized Hit- tr|B9SKW2|B9SKW2_RICCO
Transcriptional corepressor SEUSS, putative
OS=Ricinus,39.81,8e-17,seg,NULL; LIM_bind,NULL; coiled-coil,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,NODE_30231_length_1557_cov_207.021194.path1.1
(401 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62090.2 | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938... 196 3e-50
AT5G62090.1 | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938... 196 3e-50
AT4G25515.1 | Symbols: SLK3 | SEUSS-like 3 | chr4:13028219-13031... 179 3e-45
AT4G25520.1 | Symbols: SLK1 | SEUSS-like 1 | chr4:13032450-13035... 177 9e-45
AT1G43850.2 | Symbols: SEU | SEUSS transcriptional co-regulator ... 142 3e-34
AT1G43850.1 | Symbols: SEU | SEUSS transcriptional co-regulator ... 142 3e-34
>AT5G62090.2 | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938540
REVERSE LENGTH=816
Length = 816
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 93/106 (87%)
Query: 296 SGAKRPYDSGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKKRWCLSLYDNVG 355
+G RPY++ VCARRLMQYLYHQRQRPS++SI YWRKFV EY+SPRAKKRWCLS YDNVG
Sbjct: 281 TGGPRPYENSVCARRLMQYLYHQRQRPSESSIVYWRKFVTEYFSPRAKKRWCLSHYDNVG 340
Query: 356 HHALGVFPQAAMDAWHCDICGSKSGKGFEATSEVLPRLNEIKFGSG 401
H ALGV PQAA D W CD+CGSKSG+GFEAT +VLPRLNEIKF SG
Sbjct: 341 HSALGVSPQAATDEWQCDLCGSKSGRGFEATFDVLPRLNEIKFASG 386
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 99/196 (50%), Gaps = 17/196 (8%)
Query: 13 SSSSSGIFFQGDGQSQNAVXXXXXXXXXXXXXXIPGTG-----RSNLGLVSGDMSNAVLN 67
+SS+SGIFFQGD +SQ+ + PG G NL +VSGDM N V+
Sbjct: 2 ASSTSGIFFQGDDESQSFINSHLTSSYGNSSNSAPGCGGPTGGYHNLSMVSGDMHNPVMM 61
Query: 68 SVTNSAPSVGASSLVTDANSALS-GGPNLQRSASFNTESYLRLPAXXXXXXXXXXXXXXX 126
SV+ PS GASSLVTDANS LS GGP+LQRSAS N ESY+RLPA
Sbjct: 62 SVSTPGPSAGASSLVTDANSGLSGGGPHLQRSASINNESYMRLPASPMSFSSNNISISGS 121
Query: 127 XVMDGSVVQQSSHPDXXXXXXXXXXXXXXXXXXXXXXXXXXXGQGPLPMGARVPGSFVQD 186
V+DGS V Q P Q PL M R SF QD
Sbjct: 122 SVVDGSTVVQRHDPS-----------VQLGGSSATSLPTSQTNQIPLSMARRASESFFQD 170
Query: 187 PNNLSQLQKKPRLDIK 202
PNNL+Q +KKPRLD K
Sbjct: 171 PNNLTQARKKPRLDSK 186
>AT5G62090.1 | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938540
REVERSE LENGTH=816
Length = 816
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 93/106 (87%)
Query: 296 SGAKRPYDSGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKKRWCLSLYDNVG 355
+G RPY++ VCARRLMQYLYHQRQRPS++SI YWRKFV EY+SPRAKKRWCLS YDNVG
Sbjct: 281 TGGPRPYENSVCARRLMQYLYHQRQRPSESSIVYWRKFVTEYFSPRAKKRWCLSHYDNVG 340
Query: 356 HHALGVFPQAAMDAWHCDICGSKSGKGFEATSEVLPRLNEIKFGSG 401
H ALGV PQAA D W CD+CGSKSG+GFEAT +VLPRLNEIKF SG
Sbjct: 341 HSALGVSPQAATDEWQCDLCGSKSGRGFEATFDVLPRLNEIKFASG 386
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 99/196 (50%), Gaps = 17/196 (8%)
Query: 13 SSSSSGIFFQGDGQSQNAVXXXXXXXXXXXXXXIPGTG-----RSNLGLVSGDMSNAVLN 67
+SS+SGIFFQGD +SQ+ + PG G NL +VSGDM N V+
Sbjct: 2 ASSTSGIFFQGDDESQSFINSHLTSSYGNSSNSAPGCGGPTGGYHNLSMVSGDMHNPVMM 61
Query: 68 SVTNSAPSVGASSLVTDANSALS-GGPNLQRSASFNTESYLRLPAXXXXXXXXXXXXXXX 126
SV+ PS GASSLVTDANS LS GGP+LQRSAS N ESY+RLPA
Sbjct: 62 SVSTPGPSAGASSLVTDANSGLSGGGPHLQRSASINNESYMRLPASPMSFSSNNISISGS 121
Query: 127 XVMDGSVVQQSSHPDXXXXXXXXXXXXXXXXXXXXXXXXXXXGQGPLPMGARVPGSFVQD 186
V+DGS V Q P Q PL M R SF QD
Sbjct: 122 SVVDGSTVVQRHDPS-----------VQLGGSSATSLPTSQTNQIPLSMARRASESFFQD 170
Query: 187 PNNLSQLQKKPRLDIK 202
PNNL+Q +KKPRLD K
Sbjct: 171 PNNLTQARKKPRLDSK 186
>AT4G25515.1 | Symbols: SLK3 | SEUSS-like 3 | chr4:13028219-13031463
FORWARD LENGTH=685
Length = 685
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 75/102 (73%), Positives = 88/102 (86%)
Query: 300 RPYDSGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKKRWCLSLYDNVGHHAL 359
RPY+ GVCAR+LM YLYH +QRP++N I YWRKFVAEY+SPRAK+R CLS Y++VGHHAL
Sbjct: 154 RPYEVGVCARKLMMYLYHLQQRPAENCITYWRKFVAEYFSPRAKQRLCLSQYESVGHHAL 213
Query: 360 GVFPQAAMDAWHCDICGSKSGKGFEATSEVLPRLNEIKFGSG 401
G+FPQAA D W CD+CG+KSGKGFEAT +VL RL EIKF SG
Sbjct: 214 GMFPQAAPDMWQCDLCGTKSGKGFEATFDVLARLIEIKFASG 255
>AT4G25520.1 | Symbols: SLK1 | SEUSS-like 1 | chr4:13032450-13035803
REVERSE LENGTH=748
Length = 748
Score = 177 bits (450), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 74/102 (72%), Positives = 87/102 (85%)
Query: 300 RPYDSGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKKRWCLSLYDNVGHHAL 359
RPY+ GVCAR+LM YLYH +QRP++N I YWRKFVAEY+SPRAK+R CLS Y++ GHHAL
Sbjct: 182 RPYEVGVCARKLMMYLYHLQQRPAENCITYWRKFVAEYFSPRAKQRLCLSQYESAGHHAL 241
Query: 360 GVFPQAAMDAWHCDICGSKSGKGFEATSEVLPRLNEIKFGSG 401
G+FPQAA D W CD+CG+KSGKGFEAT +VL RL EIKF SG
Sbjct: 242 GMFPQAAPDMWQCDLCGTKSGKGFEATFDVLARLIEIKFASG 283
>AT1G43850.2 | Symbols: SEU | SEUSS transcriptional co-regulator |
chr1:16617872-16621596 FORWARD LENGTH=877
Length = 877
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 77/100 (77%), Gaps = 4/100 (4%)
Query: 302 YDSGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKKRWCLSLYDNVGHHALGV 361
Y+ G+ A+RL QY+Y Q+ RP DN+I +WRKFVAEY++P AKKRWC+S+Y + G GV
Sbjct: 301 YEPGMGAQRLTQYMYRQQHRPEDNNIEFWRKFVAEYFAPNAKKRWCVSMYGS-GRQTTGV 359
Query: 362 FPQAAMDAWHCDICGSKSGKGFEATSEVLPRLNEIKFGSG 401
FPQ D WHC+IC K G+GFEAT+EVLPRL +IK+ SG
Sbjct: 360 FPQ---DVWHCEICNRKPGRGFEATAEVLPRLFKIKYESG 396
>AT1G43850.1 | Symbols: SEU | SEUSS transcriptional co-regulator |
chr1:16617872-16621596 FORWARD LENGTH=877
Length = 877
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 77/100 (77%), Gaps = 4/100 (4%)
Query: 302 YDSGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKKRWCLSLYDNVGHHALGV 361
Y+ G+ A+RL QY+Y Q+ RP DN+I +WRKFVAEY++P AKKRWC+S+Y + G GV
Sbjct: 301 YEPGMGAQRLTQYMYRQQHRPEDNNIEFWRKFVAEYFAPNAKKRWCVSMYGS-GRQTTGV 359
Query: 362 FPQAAMDAWHCDICGSKSGKGFEATSEVLPRLNEIKFGSG 401
FPQ D WHC+IC K G+GFEAT+EVLPRL +IK+ SG
Sbjct: 360 FPQ---DVWHCEICNRKPGRGFEATAEVLPRLFKIKYESG 396