Miyakogusa Predicted Gene

Lj2g3v0392950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0392950.1 tr|G7I7Z0|G7I7Z0_MEDTR Cleavage and
polyadenylation specificity factor subunit OS=Medicago
truncatul,90.22,0,Metallo-hydrolase/oxidoreductase,NULL; no
description,NULL; CLEAVAGE AND POLYADENYLATION
SPECIFICITY,CUFF.34553.1
         (329 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23880.1 | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleav...   573   e-164
AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation s...   123   2e-28
AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation s...   123   2e-28
AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation s...   123   2e-28
AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage ...   106   3e-23

>AT5G23880.1 | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleavage
           and polyadenylation specificity factor 100 |
           chr5:8052550-8058147 FORWARD LENGTH=739
          Length = 739

 Score =  573 bits (1478), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 273/330 (82%), Positives = 306/330 (92%), Gaps = 1/330 (0%)

Query: 1   MGTSVQVKPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSRVASTIDAVLL 60
           MGTSVQV PLCGVYNENPLSYLVSIDGFNFLIDCGWND FD SLL+PLSRVASTIDAVLL
Sbjct: 1   MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL 60

Query: 61  SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFLSRKQVSEFDLFTLDDID 120
           SHPDTLH+GALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQFLSRKQVS+FDLFTLDDID
Sbjct: 61  SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120

Query: 121 SAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180
           SAFQ+V RLTYSQN+HLSGKGEGIVIAPHVAGH+LGG+IW+ITKDGEDVIYAVD+NHRKE
Sbjct: 121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180

Query: 181 RHLNGTVLGSFVRPAVLITDAYNAL-NNQPYRRQKDKEFGDILKKTLRSGGNVLLPIDTA 239
           RHLNGTVL SFVRPAVLITDAY+AL  NQ  R+Q+DKEF D + K L  GGNVLLP+DTA
Sbjct: 181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240

Query: 240 GRVLELILMLESYWAEENLVYPIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIF 299
           GRVLEL+L+LE +W++    +PIYFL+YVSSSTIDYVKSFLEWMSD+I+KSFE +R+N F
Sbjct: 241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300

Query: 300 LLKYITLLVNKTELDNVPDGPKVVLASMAS 329
           LL+++TLL+NKT+LDN P GPKVVLASMAS
Sbjct: 301 LLRHVTLLINKTDLDNAPPGPKVVLASMAS 330


>AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 167/342 (48%), Gaps = 39/342 (11%)

Query: 2   GTSVQVKPLCGVYNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
           G  + V PL            +S  G N L DCG            + D  DPS      
Sbjct: 19  GDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS------ 72

Query: 50  RVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQFLSRK 106
               +ID +L++H    H  +LPY +++   +  VF   +T+ +Y+L LLT Y + +S+ 
Sbjct: 73  ----SIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKL-LLTDYVK-VSKV 126

Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDG 166
            V +  LF   DI+ +   +  + + Q   ++G    I    + AGH+LG  ++ +   G
Sbjct: 127 SVEDM-LFDEQDINKSMDKIEVIDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIAG 181

Query: 167 EDVIYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTL 226
             ++Y  D++  ++RHL    L  F  P + I ++ + +     R  ++K F D++  T+
Sbjct: 182 VRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQLHQSRHIREKRFTDVIHSTV 240

Query: 227 RSGGNVLLPIDTAGRVLELILMLESYWAEENLVY--PIYFLSYVSSSTIDYVKSFLEWMS 284
             GG VL+P    GR  EL+L+L+ YWA    ++  PIY+ S ++   +   ++++  M+
Sbjct: 241 AQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMN 300

Query: 285 DTIAKSFEQTRENIFLLKYITLLVNKTELDNVPDGPKVVLAS 326
           D I   F  +  N F+ K+I+ L +  + ++V  GP VV+A+
Sbjct: 301 DRIRNQFANS--NPFVFKHISPLNSIDDFNDV--GPSVVMAT 338


>AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 167/342 (48%), Gaps = 39/342 (11%)

Query: 2   GTSVQVKPLCGVYNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
           G  + V PL            +S  G N L DCG            + D  DPS      
Sbjct: 19  GDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS------ 72

Query: 50  RVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQFLSRK 106
               +ID +L++H    H  +LPY +++   +  VF   +T+ +Y+L LLT Y + +S+ 
Sbjct: 73  ----SIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKL-LLTDYVK-VSKV 126

Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDG 166
            V +  LF   DI+ +   +  + + Q   ++G    I    + AGH+LG  ++ +   G
Sbjct: 127 SVEDM-LFDEQDINKSMDKIEVIDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIAG 181

Query: 167 EDVIYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTL 226
             ++Y  D++  ++RHL    L  F  P + I ++ + +     R  ++K F D++  T+
Sbjct: 182 VRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQLHQSRHIREKRFTDVIHSTV 240

Query: 227 RSGGNVLLPIDTAGRVLELILMLESYWAEENLVY--PIYFLSYVSSSTIDYVKSFLEWMS 284
             GG VL+P    GR  EL+L+L+ YWA    ++  PIY+ S ++   +   ++++  M+
Sbjct: 241 AQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMN 300

Query: 285 DTIAKSFEQTRENIFLLKYITLLVNKTELDNVPDGPKVVLAS 326
           D I   F  +  N F+ K+I+ L +  + ++V  GP VV+A+
Sbjct: 301 DRIRNQFANS--NPFVFKHISPLNSIDDFNDV--GPSVVMAT 338


>AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 167/342 (48%), Gaps = 39/342 (11%)

Query: 2   GTSVQVKPLCGVYNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
           G  + V PL            +S  G N L DCG            + D  DPS      
Sbjct: 19  GDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS------ 72

Query: 50  RVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQFLSRK 106
               +ID +L++H    H  +LPY +++   +  VF   +T+ +Y+L LLT Y + +S+ 
Sbjct: 73  ----SIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKL-LLTDYVK-VSKV 126

Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDG 166
            V +  LF   DI+ +   +  + + Q   ++G    I    + AGH+LG  ++ +   G
Sbjct: 127 SVEDM-LFDEQDINKSMDKIEVIDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIAG 181

Query: 167 EDVIYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTL 226
             ++Y  D++  ++RHL    L  F  P + I ++ + +     R  ++K F D++  T+
Sbjct: 182 VRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQLHQSRHIREKRFTDVIHSTV 240

Query: 227 RSGGNVLLPIDTAGRVLELILMLESYWAEENLVY--PIYFLSYVSSSTIDYVKSFLEWMS 284
             GG VL+P    GR  EL+L+L+ YWA    ++  PIY+ S ++   +   ++++  M+
Sbjct: 241 AQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMN 300

Query: 285 DTIAKSFEQTRENIFLLKYITLLVNKTELDNVPDGPKVVLAS 326
           D I   F  +  N F+ K+I+ L +  + ++V  GP VV+A+
Sbjct: 301 DRIRNQFANS--NPFVFKHISPLNSIDDFNDV--GPSVVMAT 338


>AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage and
           polyadenylation specificity factor 73 kDa subunit-II |
           chr2:320597-323845 FORWARD LENGTH=613
          Length = 613

 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 129/276 (46%), Gaps = 12/276 (4%)

Query: 22  LVSIDGFNFLIDCGW-------NDHFDPSLLQPLSRVASTIDAVLLSHPDTLHLGALPYA 74
           +V+I+G   + DCG        N + + SL+       + I  ++++H    H+GALPY 
Sbjct: 20  VVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITHFHMDHVGALPYF 79

Query: 75  MKQLGLSAPVFSTEPVYRLGLLTMYD-QFLSRKQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
            +  G + P++ + P   L  L + D + +   +  E +LFT   I +  + V  +   Q
Sbjct: 80  TEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIANCMKKVIAIDLKQ 139

Query: 134 NHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKERHLNGTVLGSFVR 193
              +    E + I  + AGH+LG  +         ++Y  D+N   +RHL    +   ++
Sbjct: 140 TIQVD---EDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-LQ 195

Query: 194 PAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRSGGNVLLPIDTAGRVLELILMLESYW 253
             +LI+++  A   +  +  +++EF   + K +  GG  L+P    GR  EL ++L+ YW
Sbjct: 196 LDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYW 255

Query: 254 AEENLVYPIYFLSYVSSSTIDYVKSFLEWMSDTIAK 289
              N+  PIYF S ++     Y K  + W S  + +
Sbjct: 256 ERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKE 291