Miyakogusa Predicted Gene

Lj2g3v0371730.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0371730.1 tr|I0Z3C5|I0Z3C5_9CHLO 60S ribosomal protein L36
OS=Coccomyxa subellipsoidea C-169 PE=3
SV=1,74.63,2e-19,RIBOSOMAL_L36E,Ribosomal protein L36e; 60S RIBOSOMAL
PROTEIN L36,Ribosomal protein L36e; Ribosomal_L,CUFF.34543.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37600.2 | Symbols:  | Ribosomal protein L36e family protein ...   120   1e-28
AT2G37600.1 | Symbols:  | Ribosomal protein L36e family protein ...   120   1e-28
AT5G02450.1 | Symbols:  | Ribosomal protein L36e family protein ...   119   5e-28
AT3G53740.4 | Symbols:  | Ribosomal protein L36e family protein ...   119   5e-28
AT3G53740.3 | Symbols:  | Ribosomal protein L36e family protein ...   119   5e-28
AT3G53740.2 | Symbols:  | Ribosomal protein L36e family protein ...   119   5e-28
AT3G53740.1 | Symbols:  | Ribosomal protein L36e family protein ...    94   1e-20

>AT2G37600.2 | Symbols:  | Ribosomal protein L36e family protein |
           chr2:15774410-15775203 REVERSE LENGTH=113
          Length = 113

 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/69 (89%), Positives = 64/69 (92%)

Query: 13  KQKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 72
           K KTSKR  F+R LIREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE
Sbjct: 33  KGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query: 73  MSNVLRKMR 81
           MS+VLRKMR
Sbjct: 93  MSSVLRKMR 101


>AT2G37600.1 | Symbols:  | Ribosomal protein L36e family protein |
           chr2:15774410-15775203 REVERSE LENGTH=113
          Length = 113

 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/69 (89%), Positives = 64/69 (92%)

Query: 13  KQKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 72
           K KTSKR  F+R LIREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE
Sbjct: 33  KGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query: 73  MSNVLRKMR 81
           MS+VLRKMR
Sbjct: 93  MSSVLRKMR 101


>AT5G02450.1 | Symbols:  | Ribosomal protein L36e family protein |
          chr5:533501-534394 FORWARD LENGTH=108
          Length = 108

 Score =  119 bits (297), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/69 (88%), Positives = 65/69 (94%)

Query: 13 KQKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 72
          K KTSKR  F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE
Sbjct: 29 KGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 88

Query: 73 MSNVLRKMR 81
          MS+VLRKMR
Sbjct: 89 MSSVLRKMR 97


>AT3G53740.4 | Symbols:  | Ribosomal protein L36e family protein |
           chr3:19913921-19914813 REVERSE LENGTH=112
          Length = 112

 Score =  119 bits (297), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/69 (88%), Positives = 65/69 (94%)

Query: 13  KQKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 72
           K KTSKR  F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE
Sbjct: 33  KGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query: 73  MSNVLRKMR 81
           MS+VLRKMR
Sbjct: 93  MSSVLRKMR 101


>AT3G53740.3 | Symbols:  | Ribosomal protein L36e family protein |
           chr3:19913921-19914813 REVERSE LENGTH=112
          Length = 112

 Score =  119 bits (297), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/69 (88%), Positives = 65/69 (94%)

Query: 13  KQKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 72
           K KTSKR  F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE
Sbjct: 33  KGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query: 73  MSNVLRKMR 81
           MS+VLRKMR
Sbjct: 93  MSSVLRKMR 101


>AT3G53740.2 | Symbols:  | Ribosomal protein L36e family protein |
           chr3:19913921-19914813 REVERSE LENGTH=112
          Length = 112

 Score =  119 bits (297), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/69 (88%), Positives = 65/69 (94%)

Query: 13  KQKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 72
           K KTSKR  F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE
Sbjct: 33  KGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query: 73  MSNVLRKMR 81
           MS+VLRKMR
Sbjct: 93  MSSVLRKMR 101


>AT3G53740.1 | Symbols:  | Ribosomal protein L36e family protein |
          chr3:19913921-19914813 REVERSE LENGTH=103
          Length = 103

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 56/69 (81%), Gaps = 9/69 (13%)

Query: 13 KQKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 72
          K KTSKR  F+R+LI+EVAG APYEKRITEL         LKVAKRKLGTHKRAKRKREE
Sbjct: 33 KGKTSKRTIFIRNLIKEVAGQAPYEKRITEL---------LKVAKRKLGTHKRAKRKREE 83

Query: 73 MSNVLRKMR 81
          MS+VLRKMR
Sbjct: 84 MSSVLRKMR 92