Miyakogusa Predicted Gene

Lj2g3v0346200.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0346200.1 Non Chatacterized Hit- tr|B6SI10|B6SI10_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,36.51,4e-19,
,NODE_48648_length_876_cov_65.003426.path1.1
         (222 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52420.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   225   2e-59
AT5G23920.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   151   4e-37
AT1G27990.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   117   5e-27

>AT5G52420.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endoplasmic
           reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED
           DURING: 13 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G23920.1);
           Has 30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:21281817-21282545
           FORWARD LENGTH=242
          Length = 242

 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/223 (52%), Positives = 153/223 (68%), Gaps = 7/223 (3%)

Query: 1   MSGGVGPTGCDISLPKEQEIEHKEQQDSNKSLKNPQKPTRKAGFFSFRQLNCLALVIVLS 60
           MSGGVGPT  DI+LPKE+E EH+ Q  S  S        + AGFFSFRQLN LA++IVLS
Sbjct: 1   MSGGVGPTYNDITLPKEEEEEHQTQSTSTVSSTG-----KPAGFFSFRQLNILAIIIVLS 55

Query: 61  ASGLVSVEDFGFVVFSMIYMYFMSKIAFPLHPN-SREPSVFNPQNKLLGLYVLIGAIIGL 119
           ASGLV+++DF F + ++IY +F+SK+ FP H N +R+  + +  NK+  +YV    I+GL
Sbjct: 56  ASGLVTIQDFIFTILTLIYFFFLSKLIFPPHNNPNRDAPLTSSTNKIFRIYVTAAGIVGL 115

Query: 120 YAPIAYILEGIFEGDKEGIKAAAPHVFLLASQVFMEGIAFSDGFSLPIRAFVPILYNSTR 179
             PI YI EGI E DK G+ AAAPHVFLLASQ+FMEG+A   GFS P R  VPI+YN+ R
Sbjct: 116 IIPICYIFEGIVEDDKNGVSAAAPHVFLLASQIFMEGLATMFGFSAPARILVPIVYNARR 175

Query: 180 IFTILEWVKTEIYKSTSDEHSGSYRRMYAGRALAVANMAFWCF 222
           + T++EW+ +E +       + S RRMYAG+ LA AN+  W F
Sbjct: 176 VLTLVEWIMSE-FSREDVTGTVSARRMYAGKVLAAANLGIWSF 217


>AT5G23920.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane,
           vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED
           DURING: 13 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G52420.1);
           Has 1807 Blast hits to 1807 proteins in 277 species:
           Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
           Plants - 385; Viruses - 0; Other Eukaryotes - 339
           (source: NCBI BLink). | chr5:8073363-8074118 REVERSE
           LENGTH=229
          Length = 229

 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 77/176 (43%), Positives = 107/176 (60%), Gaps = 4/176 (2%)

Query: 48  RQLNCLALVIVLSASGLVSVEDFGFVVFSMIYMY-FMSKIAFPLHPNSREPSVFNPQNKL 106
           RQL  L+ +I+L+A GLV + +  FV+   IY+Y F+S+ AFP     ++  + NP+NKL
Sbjct: 31  RQLVFLSFMILLAAKGLVGIGEIAFVILCYIYLYEFLSRFAFPRKQTEQKKRLSNPKNKL 90

Query: 107 LGLYVLIGAIIGLYAPIAYILEGIFEGDKEGIKAAAPHVFLLASQVFMEGIAFSDGFSLP 166
              Y L  AIIGL  P+ YI +GI+ GD  G  AAAPH+FLL+ Q F E I FSD +S+P
Sbjct: 91  FQAYFLATAIIGLLFPLCYIGDGIYRGDIHGAGAAAPHLFLLSGQAFTEPIGFSDKYSMP 150

Query: 167 IRAFVPILYNSTRIFTILEWVKTEIYKSTSDEHSGSYRRMYAGRALAVANMAFWCF 222
           I    P+ YN+ RIF +L+WVK E    +  +  G   R+Y GR +A  N   W +
Sbjct: 151 IGILGPVFYNARRIFALLDWVKAEF---SDTQRPGGPLRLYGGRVIASVNTVMWFY 203


>AT1G27990.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G52420.1); Has 86 Blast hits to 86 proteins in
           15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2
           (source: NCBI BLink). | chr1:9752799-9753919 REVERSE
           LENGTH=271
          Length = 271

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 102/175 (58%), Gaps = 5/175 (2%)

Query: 49  QLNCLALVIVLSASGLVSVEDFGFVVFSMIYMYFMSKIAFPLH-PNSREPSVFNPQNKLL 107
           +L  +A ++V SASGLV + D  F  F+ IY+  +S++AFP H  ++  P VF   +KL 
Sbjct: 47  ELQLVAFILVFSASGLVPILDMLFPAFASIYIIALSRLAFPSHGVSTASPEVFR-GSKLF 105

Query: 108 GLYVLIGAIIGLYAPIAYILEGIFEGDKEGIKAAAPHVFLLASQVFMEG-IAFSDGFSLP 166
            LYV+ G  IGL+ P+AY+L G   GD   +++A PH+FLL+ Q+  E  I+    FS P
Sbjct: 106 RLYVISGTTIGLFLPLAYVLGGFARGDDHAVRSATPHLFLLSCQILTENVISGLSLFSPP 165

Query: 167 IRAFVPILYNSTRIFTILEWVKTEIYKST--SDEHSGSYRRMYAGRALAVANMAF 219
           +RA VP+LY   RIF I+ W K   +  +   +         + GR LA+AN+ +
Sbjct: 166 VRALVPLLYTVWRIFVIIGWSKDVWFNKSLPINATPNVVTWFWFGRYLALANLGY 220