Miyakogusa Predicted Gene

Lj2g3v0343920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0343920.1 tr|A9S3M4|A9S3M4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_162641,38.97,7e-19, ,CUFF.34508.1
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08480.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   146   5e-36

>AT1G08480.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion,
           plasma membrane, plastid, vacuole; EXPRESSED IN: 27
           plant structures; EXPRESSED DURING: 15 growth stages;
           Has 39 Blast hits to 39 proteins in 13 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:2684340-2685395 FORWARD LENGTH=142
          Length = 142

 Score =  146 bits (369), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 89/142 (62%)

Query: 1   MADTTQGSSSFWDGYKEFWSQRFAFLGNYSKFVKREKPVRSWSSSDVEEFIAYDPVHGPV 60
           M D+       W+G K+FWS R +F  NY++F KR+ P+ SWSSSDVEEFIA DPVHGP 
Sbjct: 1   MGDSESFVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPT 60

Query: 61  LKTAREAVQYXXXXXXXXXXXXXXXXXKYSKXXXXXXXXXXXXXIFGWTFGHEVANHALQ 120
           LKTAREAV +                 KYS+             +FGWTFG EVANH LQ
Sbjct: 61  LKTAREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQ 120

Query: 121 LYRVDTLAAEAKFLDWWKFKTE 142
           LY++DT+AA+ KF++WW+ K++
Sbjct: 121 LYKLDTMAAQVKFMEWWERKSQ 142