Miyakogusa Predicted Gene

Lj2g3v0343890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0343890.1 Non Chatacterized Hit- tr|C5X6M2|C5X6M2_SORBI
Putative uncharacterized protein Sb02g012570
OS=Sorghu,43.56,3e-16,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.34505.1
         (439 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52430.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...   265   4e-71
AT4G25620.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...   263   2e-70
AT1G63720.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   132   4e-31
AT1G76660.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   111   1e-24

>AT5G52430.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr5:21283093-21285045 REVERSE LENGTH=438
          Length = 438

 Score =  265 bits (677), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 194/472 (41%), Positives = 241/472 (51%), Gaps = 99/472 (20%)

Query: 2   QKKRWXXXXXXXXXXXXQKSSKRIGHXXXXXXXXXXXXXXXXXXXQNPSTSILMPFIXXX 61
           QK RW            QK++KRIG+                      ST++++PFI   
Sbjct: 32  QKGRWGKCWSLYSCFGTQKNNKRIGNAVLVPEPVTSGVPVVTVQNSATSTTVVLPFIAPP 91

Query: 62  XXXXXFLQSDPPSATHSPAGLLSLTSLAANAYXXXXXXXIFTIGPYAYETQLVSPPVFSN 121
                FLQSDP S +HSP G LSLTS   N +       +FT+GPYA ETQ V+PPVFS 
Sbjct: 92  SSPASFLQSDPSSVSHSPVGPLSLTS---NTFSPKEPQSVFTVGPYANETQPVTPPVFSA 148

Query: 122 FTTEPSTASFTPPPE-SVQLTTPSSPEVPFAQLLASSLDRARKSNGS---QKFALYNYEF 177
           F TEPSTA +TPPPE SV +TTPSSPEVPFAQLL SSL+  R+ + S   QKF+  +YEF
Sbjct: 149 FITEPSTAPYTPPPESSVHITTPSSPEVPFAQLLTSSLELTRRDSTSGMNQKFSSSHYEF 208

Query: 178 QPYQQYPGSP-GGQLISPGSAFSTSGTSTPFPDRRP-------------------TRKWS 217
           +  Q  PGSP GG LISPGS  S SGTS+P+P + P                    RKW 
Sbjct: 209 RSNQVCPGSPGGGNLISPGSVISNSGTSSPYPGKSPMVEFRIGEPPKFLGFEHFTARKWG 268

Query: 218 SRMGSGSLTPESAGQGSRLGSGSLTPNGVGLASRLGSGCVTPDGLGQDSRLGSGSLTPDG 277
           SR GSGS+TP   G GS L SG+LTPNG                      + SG+LTP+ 
Sbjct: 269 SRFGSGSITP--VGHGSGLASGALTPNG--------------------PEIVSGNLTPNN 306

Query: 278 AGPSSQDRISVQNQFSGEASLANTENGIQSNSTLVDHRVSFELTGEDVARCLANKTGILL 337
                     +QNQ S  ASLAN+++G  S   + DHRVSFELTGEDVARCLA+K     
Sbjct: 307 T------TWPLQNQISEVASLANSDHG--SEVMVADHRVSFELTGEDVARCLASK----- 353

Query: 338 RNISRSSQGILAKDPIE---------RDNIQRDSSSCCDVCSGETNDKQCCQK-HHSVNS 387
             ++RS   +   D IE         R NI++ S           N++   QK   S   
Sbjct: 354 --LNRSHDRMNNNDRIETEESSSTDIRRNIEKRSGD-------RENEQHRIQKLSSSSIG 404

Query: 388 SSKEFNFDSRKGDVSGTAANSSEWWANKKVVGKESKSANSWAFFPMLQPEIS 439
           SSKEF FD+ K +                    E  + NSW+FFP L+  +S
Sbjct: 405 SSKEFKFDNTKDE------------------NIEKVAGNSWSFFPGLRSGVS 438


>AT4G25620.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr4:13067447-13069296 REVERSE LENGTH=449
          Length = 449

 Score =  263 bits (672), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 200/444 (45%), Positives = 246/444 (55%), Gaps = 73/444 (16%)

Query: 19  QKSSKRIGHXXXXXXXXXXXXXXX-XXXXQNPSTSILMPFIXXXXXXXXFLQSDPPSATH 77
           +K++KRIGH                     + STSI MPFI        FL S PPSA+H
Sbjct: 48  KKNNKRIGHAVLVPEPAASGAAVAPVQNSSSNSTSIFMPFIAPPSSPASFLPSGPPSASH 107

Query: 78  SPAGLLSLTSLAANAYXXXXXXXIFTIGPYAYETQLVSPPVFSNFTTEPSTASFTPPPES 137
           +P   L L SL  N          FTIGPYA+ETQ V+PPVFS FTTEPSTA FT     
Sbjct: 108 TPDPGL-LCSLTVN-----EPPSAFTIGPYAHETQPVTPPVFSAFTTEPSTAPFT----- 156

Query: 138 VQLTTPSSPEVPFAQLLASSLDRARKSNG---SQKFALYNYEFQPYQQYPGSPGGQLISP 194
               +PSSPEVPFAQLL SSL+RAR+++G   +QKF+  +YEF+  Q YPGSPGG LISP
Sbjct: 157 PPPESPSSPEVPFAQLLTSSLERARRNSGGGMNQKFSAAHYEFKSCQVYPGSPGGNLISP 216

Query: 195 GSAFSTSGTSTPFP-------------------DRRPTRKWSSRMGSGSLTPESAGQGSR 235
           G     SGTS+P+P                   +    RKW SR GSGS+TP  AGQGSR
Sbjct: 217 G-----SGTSSPYPGKCSIIEFRIGEPPKFLGFEHFTARKWGSRFGSGSITP--AGQGSR 269

Query: 236 LGSGSLTPNGVGLASRLGSGCVTPDGLGQDSRLGSGSLTPDGAGPSSQDRISVQNQFSGE 295
           LGSG+LTP+G    S+L SG VTP+G     R+  G+LTP        +   + +Q S  
Sbjct: 270 LGSGALTPDG----SKLTSGVVTPNGAETVIRMSYGNLTP-------LEGSLLDSQISEV 318

Query: 296 ASLANTENG---IQSNSTLVDHRVSFELTGEDVARCLANKTGILLRNISRSSQGILAKDP 352
           ASLAN+++G       + +V HRVSFELTGEDVARCLA+K       ++RS     A   
Sbjct: 319 ASLANSDHGSSRHNDEALVVPHRVSFELTGEDVARCLASK-------LNRSGSHEKASGE 371

Query: 353 IERDNIQRDSSSCCDVCSGETNDKQCCQKHHSVNSSSKEFNFDSRKGDVSGTAANSSEWW 412
             R N       CC   SGET  +Q  +       S+KEF FDS   ++       SEWW
Sbjct: 372 HLRPN-------CCKT-SGETESEQSQKLRSFSTGSNKEFKFDSTNEEM--IEKIRSEWW 421

Query: 413 ANKKVVGKESKSA-NSWAFFPMLQ 435
           AN+KV GK   S  NSW FFP+L+
Sbjct: 422 ANEKVAGKGDHSPRNSWTFFPVLR 445


>AT1G63720.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: hydroxyproline-rich glycoprotein family protein
           (TAIR:AT5G52430.1); Has 490 Blast hits to 394 proteins
           in 96 species: Archae - 0; Bacteria - 2; Metazoa - 132;
           Fungi - 88; Plants - 175; Viruses - 14; Other Eukaryotes
           - 79 (source: NCBI BLink). | chr1:23636122-23637348
           REVERSE LENGTH=358
          Length = 358

 Score =  132 bits (333), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/159 (53%), Positives = 99/159 (62%), Gaps = 14/159 (8%)

Query: 55  MPFIXXXXXXXXFLQSDPPSATHSPAGLLSLTSLAANAYXXXXXXXIFTIGPYAYETQLV 114
           +PFI        F QS+PPSAT SP G+LS + L  N         IF IGPYA+ETQLV
Sbjct: 90  LPFIAPPSSPASFFQSEPPSATQSPVGILSFSPLPCN-----NRPSIFAIGPYAHETQLV 144

Query: 115 SPPVFSNFTTEPSTASFTPPPE--SVQL--TTPSSPEVPFAQLLASSLDRARKSNGSQKF 170
           SPPVFS +TTEPS+A  TPP +  S+ L  TTPSSPEVPFAQL  S  +    S G +  
Sbjct: 145 SPPVFSTYTTEPSSAPITPPLDDSSIYLTTTTPSSPEVPFAQLFNS--NHQTGSYGYKFP 202

Query: 171 ALYNYEFQPYQQYPGSPGGQLISPGSAFSTSGTSTPFPD 209
              +YEFQ YQ  PGSP GQLISP      SG ++PFPD
Sbjct: 203 MSSSYEFQFYQLPPGSPLGQLISPSPG---SGPTSPFPD 238


>AT1G76660.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
           thaliana protein match is: hydroxyproline-rich
           glycoprotein family protein (TAIR:AT5G52430.1); Has 353
           Blast hits to 231 proteins in 60 species: Archae - 0;
           Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125;
           Viruses - 4; Other Eukaryotes - 139 (source: NCBI
           BLink). | chr1:28769157-28771036 REVERSE LENGTH=431
          Length = 431

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/140 (50%), Positives = 81/140 (57%), Gaps = 9/140 (6%)

Query: 67  FLQSDPPSATHSPAGLLSLTSLAANAYXXXXXXXIFTIGPYAYETQLVSPPVFSNFTTEP 126
           F  S  PS T SP   LSL   AAN+        ++  GPYA+ETQLVSPPVFS FTTEP
Sbjct: 78  FTNSALPSTTQSPNCYLSL---AANS-PGGPSSSMYATGPYAHETQLVSPPVFSTFTTEP 133

Query: 127 STASFTPPPESVQLTTPSSPEVPFAQLLASSLDRARKSNGSQKFALYNYEFQPYQQYPGS 186
           STA FTPPPE  +LT PSSP+VP+A+ L SS+D      G      YN     Y  YPGS
Sbjct: 134 STAPFTPPPELARLTAPSSPDVPYARFLTSSMDLKNSGKGH-----YNDLQATYSLYPGS 188

Query: 187 PGGQLISPGSAFSTSGTSTP 206
           P   L SP S  S  G  +P
Sbjct: 189 PASALRSPISRASGDGLLSP 208