Miyakogusa Predicted Gene

Lj2g3v0308710.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0308710.3 Non Chatacterized Hit- tr|C5WUG2|C5WUG2_SORBI
Putative uncharacterized protein Sb01g030700
OS=Sorghu,50.54,5e-19,seg,NULL; DUF3464,Protein of unknown function
DUF3464,CUFF.34511.3
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52780.1 | Symbols:  | Protein of unknown function (DUF3464) ...    99   1e-21
AT4G19100.1 | Symbols: PAM68 | Protein of unknown function (DUF3...    62   2e-10

>AT5G52780.1 | Symbols:  | Protein of unknown function (DUF3464) |
           chr5:21390943-21391449 REVERSE LENGTH=168
          Length = 168

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 17/182 (9%)

Query: 1   MKSLVCASHPTLYLPNYSSWKPKFRAFHPITAEKQPNYYPLTTPK---PPRANAKGFSNR 57
           M++L+C SH  L L + S    K ++ +P T       YP   P+      A  KGF + 
Sbjct: 1   MRALLC-SHRLLPLSSLSRTTVKTKSHNPKT------LYPNNKPRWESKLHAGPKGFQSS 53

Query: 58  PSTTETDIVPSKNRRRGVNEEEDEELPRVVLYRIIGRILFSXXXXXXXXXXXXXXXXXXK 117
            ++ +               +E       V  R++GRI+ S                  K
Sbjct: 54  RTSEKPGRPDPDPEDDPPIPQE-------VFERMMGRIVVSVGTPLGLGVAILKVLEVLK 106

Query: 118 DRGIWDAPLWIPFTTTLLTFGASTLGIAYGTLSASLDAEREGTFLGLNEVQRNWVEMWEE 177
           DR +WD PLW+P+ TTL+TFG+S LGIAYG+LS +LD  +  +  GL E + NWVEMW+E
Sbjct: 107 DRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWKE 166

Query: 178 ED 179
           + 
Sbjct: 167 DQ 168


>AT4G19100.1 | Symbols: PAM68 | Protein of unknown function
           (DUF3464) | chr4:10453453-10454359 FORWARD LENGTH=214
          Length = 214

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 7/107 (6%)

Query: 71  RRRGVNEEEDEELPRVVLYRIIGRILFSXXXXXXXXXXXXXXXXXXKDRGIWDAPLWIPF 130
           R RGV       +P +V  R+I R+ F+                  K     D P W+PF
Sbjct: 107 RERGV-------IPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPF 159

Query: 131 TTTLLTFGASTLGIAYGTLSASLDAEREGTFLGLNEVQRNWVEMWEE 177
             + + FG +  G++YG +S+S D  REG+ LG NE ++NW   W+ 
Sbjct: 160 IVSFVFFGTALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQS 206