Miyakogusa Predicted Gene

Lj2g3v0286930.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0286930.1 tr|B9ID70|B9ID70_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_808241 PE=4
SV=1,48.05,0.00000000003, ,CUFF.34496.1
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48900.1 | Symbols:  | single-stranded DNA endonuclease famil...    53   5e-08
AT3G48900.2 | Symbols:  | single-stranded DNA endonuclease famil...    52   6e-08

>AT3G48900.1 | Symbols:  | single-stranded DNA endonuclease family
           protein | chr3:18132449-18136239 FORWARD LENGTH=536
          Length = 536

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 42  SEIIDLLSPSPPKAKQSSLTSLKCEQSSDKRME-VINLSDSENDMSPEHKEKAKELRLFL 100
           +E+IDL+SP P    +S   S + ++S D ++E VI LSDSE D   EH +KA+ELR+FL
Sbjct: 469 TEVIDLISPCPEARSRSVSRSYQEQKSHDHQLETVIELSDSETD-DEEHCKKARELRIFL 527

Query: 101 ASIRNEI 107
            +IR +I
Sbjct: 528 QNIRKDI 534


>AT3G48900.2 | Symbols:  | single-stranded DNA endonuclease family
           protein | chr3:18131854-18136239 FORWARD LENGTH=600
          Length = 600

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 42  SEIIDLLSPSPPKAKQSSLTSLKCEQSSDKRME-VINLSDSENDMSPEHKEKAKELRLFL 100
           +E+IDL+SP P    +S   S + ++S D ++E VI LSDSE D   EH +KA+ELR+FL
Sbjct: 533 TEVIDLISPCPEARSRSVSRSYQEQKSHDHQLETVIELSDSETD-DEEHCKKARELRIFL 591

Query: 101 ASIRNEI 107
            +IR +I
Sbjct: 592 QNIRKDI 598