Miyakogusa Predicted Gene

Lj2g3v0276780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0276780.1 Non Chatacterized Hit- tr|E1ZGY6|E1ZGY6_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,40.71,0.000000000000002,seg,NULL; Ctf8,Chromosome
transmission fidelity protein 8,CUFF.34446.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52220.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Chromosome...   122   1e-28
AT5G52220.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   120   4e-28

>AT5G52220.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Chromosome
           transmission fidelity protein 8 (InterPro:IPR018607);
           Has 127 Blast hits to 127 proteins in 63 species: Archae
           - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants -
           31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI
           BLink). | chr5:21207097-21207678 REVERSE LENGTH=145
          Length = 145

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/127 (53%), Positives = 76/127 (59%), Gaps = 2/127 (1%)

Query: 1   MEIRIRCNCGEGSCVEWGIVELQGVVEPQPEFQDSLPNLEIGTLCR-PSSQEVYTLTIGY 59
           MEIR++C CGE  C EW IVELQGVVE Q  FQ S+ NLEIG LC   SSQ  YT T+GY
Sbjct: 1   MEIRVKCRCGEEECSEWAIVELQGVVETQASFQGSIQNLEIGRLCHSDSSQGTYTFTVGY 60

Query: 60  HELAGSXXXXXXXXXXXXXXXHPEGESGGHVELQVVGIIRHRILFKTRPKAIISRPQITS 119
           HEL GS                 E  SG   EL+VVGIIR +ILFKTRPK +IS     S
Sbjct: 61  HELVGSKVTLKKPLLVLKKLQFDE-VSGKATELEVVGIIRTKILFKTRPKPLISGNNNLS 119

Query: 120 REKQTPI 126
             K  P+
Sbjct: 120 LNKLKPL 126


>AT5G52220.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 18 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Chromosome transmission fidelity
           protein 8 (InterPro:IPR018607). | chr5:21207165-21207678
           REVERSE LENGTH=116
          Length = 116

 Score =  120 bits (300), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/114 (57%), Positives = 72/114 (63%), Gaps = 2/114 (1%)

Query: 1   MEIRIRCNCGEGSCVEWGIVELQGVVEPQPEFQDSLPNLEIGTLCR-PSSQEVYTLTIGY 59
           MEIR++C CGE  C EW IVELQGVVE Q  FQ S+ NLEIG LC   SSQ  YT T+GY
Sbjct: 1   MEIRVKCRCGEEECSEWAIVELQGVVETQASFQGSIQNLEIGRLCHSDSSQGTYTFTVGY 60

Query: 60  HELAGSXXXXXXXXXXXXXXXHPEGESGGHVELQVVGIIRHRILFKTRPKAIIS 113
           HEL GS                 E  SG   EL+VVGIIR +ILFKTRPK +IS
Sbjct: 61  HELVGSKVTLKKPLLVLKKLQFDE-VSGKATELEVVGIIRTKILFKTRPKPLIS 113