Miyakogusa Predicted Gene

Lj2g3v0276760.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0276760.2 CUFF.34447.2
         (542 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52230.2 | Symbols: MBD13 | methyl-CPG-binding domain protein...    88   1e-17
AT5G52230.1 | Symbols: MBD13 | methyl-CPG-binding domain protein...    88   1e-17
AT5G59800.1 | Symbols: MBD7, ATMBD7 | methyl-CPG-binding domain ...    62   9e-10
AT5G59380.1 | Symbols: MBD6, ATMBD6 | methyl-CPG-binding domain ...    55   1e-07
AT3G46580.1 | Symbols: MBD05, MBD5, ATMBD5 | methyl-CPG-binding ...    52   9e-07

>AT5G52230.2 | Symbols: MBD13 | methyl-CPG-binding domain protein 13
           | chr5:21208097-21211634 REVERSE LENGTH=746
          Length = 746

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 66/127 (51%), Gaps = 37/127 (29%)

Query: 8   EGLPPGWQVEVKVRKNGKRSDKYYISPSSGLKFNSKAEVLRHLESANKVSIQRISENVVV 67
           +GL    +VE++VRKNG++                                    + V+V
Sbjct: 8   DGLSAERKVEIRVRKNGRK------------------------------------DKVIV 31

Query: 68  EKRPAEGLPPGWIKKTRITNK-GDKIRRDPFYIDPVSGYTFRSIKDVDRYLASGKIGRNA 126
           EK  A+GLP GWIKK  ITN+ G K RRDPF+IDP S Y F+S KD  RY+ +G IG  A
Sbjct: 32  EKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQSFKDASRYVETGNIGHYA 91

Query: 127 FKSKDND 133
            K K++D
Sbjct: 92  RKLKESD 98


>AT5G52230.1 | Symbols: MBD13 | methyl-CPG-binding domain protein 13
           | chr5:21208097-21211634 REVERSE LENGTH=746
          Length = 746

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 66/127 (51%), Gaps = 37/127 (29%)

Query: 8   EGLPPGWQVEVKVRKNGKRSDKYYISPSSGLKFNSKAEVLRHLESANKVSIQRISENVVV 67
           +GL    +VE++VRKNG++                                    + V+V
Sbjct: 8   DGLSAERKVEIRVRKNGRK------------------------------------DKVIV 31

Query: 68  EKRPAEGLPPGWIKKTRITNK-GDKIRRDPFYIDPVSGYTFRSIKDVDRYLASGKIGRNA 126
           EK  A+GLP GWIKK  ITN+ G K RRDPF+IDP S Y F+S KD  RY+ +G IG  A
Sbjct: 32  EKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQSFKDASRYVETGNIGHYA 91

Query: 127 FKSKDND 133
            K K++D
Sbjct: 92  RKLKESD 98


>AT5G59800.1 | Symbols: MBD7, ATMBD7 | methyl-CPG-binding domain 7 |
           chr5:24094752-24096422 REVERSE LENGTH=306
          Length = 306

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 10  LPPGWQVEVKVRKNGKRSDKYYISPSSGLKFNSKAEVLRHL-ESANKVSIQ-RISENVVV 67
           LP GW VE   RKN    DKYY+   +G +F S   V R+L ES N +  Q R+ +N   
Sbjct: 116 LPRGWSVEEVPRKNSHYIDKYYVERKTGKRFRSLVSVERYLRESRNSIEQQLRVLQNRRG 175

Query: 68  EKRPAEGLPPGWIKKTRITNKGDKIRRDPFYIDPVSGYTFRSIKDVDRYLAS 119
             +    LP GWI + +       I R   YI+P +G  FRS+  V+RYL S
Sbjct: 176 HSKDFR-LPDGWIVEEKPRRSSSHIDRS--YIEPGTGNKFRSMAAVERYLIS 224


>AT5G59380.1 | Symbols: MBD6, ATMBD6 | methyl-CPG-binding domain 6 |
           chr5:23952321-23953485 FORWARD LENGTH=225
          Length = 225

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 7   DEGLPPGWQVEVKVRKNGKRS---DKYYISPSSGLKFNSKAEVLRHLESANKVSIQRISE 63
           D  LPPGW+VE K+R +G  +   DKYY  P++G KF S+ EVL +LE        + +E
Sbjct: 78  DNWLPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAE 137

Query: 64  NVVVEKRPAEG 74
           N        EG
Sbjct: 138 NTYFNPDHFEG 148


>AT3G46580.1 | Symbols: MBD05, MBD5, ATMBD5 | methyl-CPG-binding
          domain protein 5 | chr3:17148397-17149328 FORWARD
          LENGTH=182
          Length = 182

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 4  PNSDEGLPPGWQVEVKVRKNGKRS---DKYYISPSSGLKFNSKAEVLRHLE 51
          P  D  LPP W+ E++VR +G ++   DK+Y  P +G KF SK EVL +LE
Sbjct: 29 PGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLE 79