Miyakogusa Predicted Gene

Lj2g3v0253500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0253500.1 tr|A9SNE2|A9SNE2_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,31.38,3e-17,seg,NULL,gene.g38710.t1.1
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10800.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   133   1e-31

>AT1G10800.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: inflorescence meristem, hypocotyl,
           root, flower; EXPRESSED DURING: petal differentiation
           and expansion stage; Has 23 Blast hits to 23 proteins in
           9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1
           (source: NCBI BLink). | chr1:3598158-3598514 REVERSE
           LENGTH=118
          Length = 118

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 87/118 (73%), Gaps = 2/118 (1%)

Query: 108 IALFVGLGSSFFKHPGYVMDGVVAIGALLMESFLERKGGGLLVVVSLWRVIRVAESVFEL 167
           +AL V +G SFFK PG VMDG +AI AL+++  LE+KG G +VVVSLWRV+RV E+ FEL
Sbjct: 1   MALVVAMGKSFFKQPGCVMDGTLAIVALILQVLLEKKGTGFIVVVSLWRVLRVVETAFEL 60

Query: 168 SDEAIEAQIAGIVCQFEELKEENMRLLETIHEKDKIIEMLTVDLDKCRSGN--PFINS 223
           SDEAIE QI GI+ QF+ L +EN  LLET+ EKD++I+ML  +L++ +     PF+  
Sbjct: 61  SDEAIEVQIDGIISQFQALSKENRTLLETLAEKDEVIKMLEEELNRFKENGDIPFVKP 118