Miyakogusa Predicted Gene

Lj2g3v0227090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0227090.1 tr|C1DYP2|C1DYP2_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_55874
,49.07,5e-19,Pam16,Protein Transporter, Pam16; MITOCHONDRIA ASSOCIATED
GRANULOCYTE MACROPHAGE CSF SIGNALING MOLEC,CUFF.34392.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59280.1 | Symbols: TXR1 | Protein Transporter, Pam16 | chr3:...   172   3e-44
AT5G61880.2 | Symbols:  | Protein Transporter, Pam16 | chr5:2485...   147   1e-36
AT5G61880.1 | Symbols:  | Protein Transporter, Pam16 | chr5:2485...   147   1e-36

>AT3G59280.1 | Symbols: TXR1 | Protein Transporter, Pam16 |
           chr3:21909266-21910519 REVERSE LENGTH=116
          Length = 116

 Score =  172 bits (437), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 98/116 (84%), Gaps = 1/116 (0%)

Query: 1   MASKILANLIVMGGGILVRAVAQAYRQALNNAAKNGVAQETIQNTVRRVSKVMTEQEARQ 60
           MA ++LANLIVMG GI+ RAV QAYRQAL NA+K+GVAQE +QN VR+  K +TEQEARQ
Sbjct: 1   MAGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQ 60

Query: 61  ILGVAEETPWEEILKKYDRLFENNSKNGSFYLQSKVHRAKECLEAVH-GKSEGTPS 115
           ILGV E+T WEEIL+KYD+LFENN+K GSFYLQSKVHRAKECLE V+  +  GTPS
Sbjct: 61  ILGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKECLEVVYRSQGNGTPS 116


>AT5G61880.2 | Symbols:  | Protein Transporter, Pam16 |
           chr5:24850598-24851512 FORWARD LENGTH=113
          Length = 113

 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/115 (61%), Positives = 88/115 (76%), Gaps = 2/115 (1%)

Query: 1   MASKILANLIVMGGGILVRAVAQAYRQALNNAAKNGVAQETIQNTVRRVSKVMTEQEARQ 60
           MA+++LA++IVMG GI+ RA  QAYRQAL NA+K GVA E  Q   R ++  + E EARQ
Sbjct: 1   MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQTIKRGLT--IGEAEARQ 58

Query: 61  ILGVAEETPWEEILKKYDRLFENNSKNGSFYLQSKVHRAKECLEAVHGKSEGTPS 115
           ILGV E++ W+EILKKYD LFE N++NGSFYLQSKVHRAKECLE  + KS  T +
Sbjct: 59  ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQKSTTTSA 113


>AT5G61880.1 | Symbols:  | Protein Transporter, Pam16 |
           chr5:24850598-24851512 FORWARD LENGTH=113
          Length = 113

 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/115 (61%), Positives = 88/115 (76%), Gaps = 2/115 (1%)

Query: 1   MASKILANLIVMGGGILVRAVAQAYRQALNNAAKNGVAQETIQNTVRRVSKVMTEQEARQ 60
           MA+++LA++IVMG GI+ RA  QAYRQAL NA+K GVA E  Q   R ++  + E EARQ
Sbjct: 1   MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQTIKRGLT--IGEAEARQ 58

Query: 61  ILGVAEETPWEEILKKYDRLFENNSKNGSFYLQSKVHRAKECLEAVHGKSEGTPS 115
           ILGV E++ W+EILKKYD LFE N++NGSFYLQSKVHRAKECLE  + KS  T +
Sbjct: 59  ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQKSTTTSA 113