Miyakogusa Predicted Gene

Lj2g3v0191790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0191790.1 Non Chatacterized Hit- tr|K3XEG3|K3XEG3_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si000280,44.91,8e-19,seg,NULL; coiled-coil,NULL,CUFF.34421.1
         (243 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53020.1 | Symbols:  | Ribonuclease P protein subunit P38-rel...   122   2e-28

>AT5G53020.1 | Symbols:  | Ribonuclease P protein subunit
           P38-related | chr5:21499899-21502235 FORWARD LENGTH=720
          Length = 720

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 121/196 (61%), Gaps = 17/196 (8%)

Query: 1   MNQKLKEMEGLVESRDMXXXXXXXXXXXXXXXVNKAERDAKQLRELE----TNQSSDLRK 56
           + ++LKE EGL+ES+D                + KAE++ + LRE +       SS+L +
Sbjct: 104 LQERLKEKEGLLESKDKAIEEEKRKCELLEERLVKAEKEVQDLRETQERDVQEHSSELWR 163

Query: 57  HKTAFIELVSNQRHLEAELGRAVKQMEAAKHELEESDLMAQNFSLEIAKLHKDLEQKDKI 116
            K  F+EL S+QR LEAEL RA KQ+EA  HELE       + SLEI K+ KDLEQKD+I
Sbjct: 164 QKKTFLELASSQRQLEAELSRANKQIEAKGHELE-------DLSLEINKMRKDLEQKDRI 216

Query: 117 LSAMLRKSKMDSEEKQMLLKEVKLSKARRKQAEQETERWRVVSEGKK-ERHSFKNMLVNL 175
           L+ M++KSK+D  EKQM L    L +A++KQ E+E ++W++  + +K ER S ++M    
Sbjct: 217 LAVMMKKSKLDMTEKQMTL----LKEAKKKQDEEEAKKWKMNPKSRKHERRSLRSMFAFE 272

Query: 176 STRGMQSSSAGS-SHI 190
           +T   +++S GS +HI
Sbjct: 273 ATSKPKTNSVGSITHI 288