Miyakogusa Predicted Gene

Lj2g3v0179290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0179290.1 tr|I3S8R8|I3S8R8_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2
SV=1,99.44,0,RUBISCOSMALL,Ribulose bisphosphate carboxylase, small
chain; no description,Ribulose bisphosphate ca,CUFF.37622.1
         (177 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylas...   289   6e-79
AT5G38430.1 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   287   3e-78
AT5G38420.1 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   285   1e-77
AT5G38410.1 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   284   2e-77
AT5G38410.3 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   278   1e-75
AT5G38410.2 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   267   4e-72
AT1G67090.2 | Symbols: RBCS1A | ribulose bisphosphate carboxylas...   159   6e-40

>AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylase
           small chain 1A | chr1:25048465-25049249 REVERSE
           LENGTH=180
          Length = 180

 Score =  289 bits (740), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 136/178 (76%), Positives = 150/178 (84%), Gaps = 1/178 (0%)

Query: 1   MASSMISSPA-VTTVNHANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWP 59
           MASSM+SS   V +   A MVAPF GLKS A FP TRKANNDITSI SNGGRVNCMQVWP
Sbjct: 1   MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWP 60

Query: 60  PIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGR 119
           PIGKKKFETLSYLP LT  +LAKEV+YLIR  W+PC+EFE E GFVYRE+  SPGYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGR 120

Query: 120 YWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           YWTMWKLP+FG TD++QVLKE+EE KK YPNAFIRIIGFDN RQVQCISFIA++P  +
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSF 178


>AT5G38430.1 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15384350-15385155 REVERSE
           LENGTH=181
          Length = 181

 Score =  287 bits (734), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 135/178 (75%), Positives = 153/178 (85%), Gaps = 1/178 (0%)

Query: 1   MASSMISSPAV-TTVNHANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWP 59
           MASSM+SS AV T+   A MVAPFTGLKS A FPVTRKANNDITSI SNGGRV+CM+VWP
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60

Query: 60  PIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGR 119
           PIGKKKFETLSYLP LT  +LAKEV+YL+R  W+PC+EFE E GFVYRE+  +PGYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 120 YWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           YWTMWKLP+FG TD++QVLKE+EE KK YP AFIRIIGFDN RQVQCISFIA++P  +
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 178


>AT5G38420.1 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15381203-15381978 REVERSE
           LENGTH=181
          Length = 181

 Score =  285 bits (728), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 134/178 (75%), Positives = 152/178 (85%), Gaps = 1/178 (0%)

Query: 1   MASSMISSPAV-TTVNHANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWP 59
           MASSM SS AV T+   A MVAPFTGLKS A FPVTRKANNDITSI SNGGRV+CM+VWP
Sbjct: 1   MASSMFSSTAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60

Query: 60  PIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGR 119
           PIGKKKFETLSYLP L+  +LAKEV+YL+R  W+PC+EFE E GFVYRE+  +PGYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 120 YWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           YWTMWKLP+FG TD++QVLKE+EE KK YP AFIRIIGFDN RQVQCISFIA++P  +
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 178


>AT5G38410.1 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15377501-15378306 REVERSE
           LENGTH=181
          Length = 181

 Score =  284 bits (726), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 133/178 (74%), Positives = 152/178 (85%), Gaps = 1/178 (0%)

Query: 1   MASSMISSPAV-TTVNHANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWP 59
           MASSM+SS AV T+   A MVAPFTGLKS A FPVTRK N DITSIASNGGRV+CM+VWP
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWP 60

Query: 60  PIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGR 119
           PIGKKKFETLSYLP L+  +LAKEV+YL+R  W+PC+EFE E GFVYRE+  +PGYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 120 YWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           YWTMWKLP+FG TD++QVLKE+EE KK YP AFIRIIGFDN RQVQCISFIA++P  +
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 178


>AT5G38410.3 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15377501-15378306 REVERSE
           LENGTH=186
          Length = 186

 Score =  278 bits (712), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 133/183 (72%), Positives = 153/183 (83%), Gaps = 6/183 (3%)

Query: 1   MASSMISSPAV-TTVNHANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWP 59
           MASSM+SS AV T+   A MVAPFTGLKS A FPVTRK N DITSIASNGGRV+CM+VWP
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWP 60

Query: 60  PIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFE-----TEKGFVYRENHKSPG 114
           PIGKKKFETLSYLP L+  +LAKEV+YL+R  W+PC+EFE     T+ GFVYRE+  +PG
Sbjct: 61  PIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGNTPG 120

Query: 115 YYDGRYWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRP 174
           YYDGRYWTMWKLP+FG TD++QVLKE+EE KK YP AFIRIIGFDN RQVQCISFIA++P
Sbjct: 121 YYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 180

Query: 175 EGY 177
             +
Sbjct: 181 PSF 183


>AT5G38410.2 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15377501-15378306 REVERSE
           LENGTH=174
          Length = 174

 Score =  267 bits (682), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 128/178 (71%), Positives = 146/178 (82%), Gaps = 8/178 (4%)

Query: 1   MASSMISSPAV-TTVNHANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWP 59
           MASSM+SS AV T+   A MVAPFTGLKS A FPVTRK N DITSIASNGGRV+CM+VWP
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWP 60

Query: 60  PIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGR 119
           PIGKKKFETLSYLP L+  +LAKEV+YL+R  W+PC+EFE E G        +PGYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHG-------NTPGYYDGR 113

Query: 120 YWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           YWTMWKLP+FG TD++QVLKE+EE KK YP AFIRIIGFDN RQVQCISFIA++P  +
Sbjct: 114 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 171


>AT1G67090.2 | Symbols: RBCS1A | ribulose bisphosphate carboxylase
           small chain 1A | chr1:25048590-25049249 REVERSE
           LENGTH=136
          Length = 136

 Score =  159 bits (403), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 1   MASSMISSPA-VTTVNHANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWP 59
           MASSM+SS   V +   A MVAPF GLKS A FP TRKANNDITSI SNGGRVNCMQVWP
Sbjct: 1   MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWP 60

Query: 60  PIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENH 110
           PIGKKKFETLSYLP LT  +LAKEV+YLIR  W+PC+EF+T+   V    H
Sbjct: 61  PIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFDTDLCTVSTVTH 111