Miyakogusa Predicted Gene

Lj2g3v0178230.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0178230.1 Non Chatacterized Hit- tr|C6T1M3|C6T1M3_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,43.75,0.000000000000004,seg,NULL,CUFF.34316.1
         (254 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43630.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   103   8e-23
AT3G59640.2 | Symbols:  | glycine-rich protein | chr3:22029101-2...    91   7e-19
AT3G59640.1 | Symbols:  | glycine-rich protein | chr3:22029101-2...    91   7e-19

>AT2G43630.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast thylakoid membrane, chloroplast, nucleus,
           chloroplast envelope; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
           thaliana protein match is: glycine-rich protein
           (TAIR:AT3G59640.2); Has 67 Blast hits to 67 proteins in
           20 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi
           - 1; Plants - 49; Viruses - 2; Other Eukaryotes - 2
           (source: NCBI BLink). | chr2:18096255-18097344 FORWARD
           LENGTH=274
          Length = 274

 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 120/242 (49%), Gaps = 31/242 (12%)

Query: 38  TSLPCISSMNAFPLSRTSLRPGARPAFGLPYLPVL---------KSQQPFHVCLAGGKGM 88
           +S+P  SS+      RTS    A  A    + P+L         KS+Q   VCL GGK  
Sbjct: 25  SSVPIRSSVRFDHFPRTSFTLRATAAVSTQFSPLLDHRRRLPTGKSKQSSAVCLFGGKDK 84

Query: 89  -MGSNEDSRWKSPEAEIEKLKGQ-SIEDMLRQQIHKQK-----------NXXXXXXXXXX 135
             GS+E S WK+    IEK  G+ S+EDMLR+QI K+                       
Sbjct: 85  PDGSDEISPWKA----IEKAMGKKSVEDMLREQIQKKDFYDTDSGGNMPPRGGGSGGGGG 140

Query: 136 XXXXXXXXXXSEEGDFAGLSDEIQQIILATIGFILVYICVIDGVELAKLSKDILKYLFGG 195
                      E+G  AG++DE  Q++LAT+GFI +Y  +I G EL KL++D +++L G 
Sbjct: 141 NGEERPEGSGGEDGGLAGIADETLQVVLATLGFIFLYTYIITGEELVKLARDYIRFLMGR 200

Query: 196 TQSLRLKKAIYKWTRFFKLLTGNRKVLKNELEEA----PTQRNNLDYYHDDVLRNYMKPN 251
            +++RL +A+  W  F + ++  R   +  LE+A    PT  ++ + Y   V++ Y+  N
Sbjct: 201 PKTVRLTRAMDSWNGFLEKMSRQRVYDEYWLEKAIINTPTWYDSPEKYR-RVIKAYVDSN 259

Query: 252 SD 253
           SD
Sbjct: 260 SD 261


>AT3G59640.2 | Symbols:  | glycine-rich protein |
           chr3:22029101-22030300 FORWARD LENGTH=246
          Length = 246

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 22/219 (10%)

Query: 23  KPVIPVKNKSQSHHFTSLPCISSM--NAFPLSRTSLRPGARPAFGLPYLPVL------KS 74
           +P +     +Q+ H +S P +SS+  +  PL + ++R  A  +    + P+       + 
Sbjct: 10  RPSLFCARTTQTRHVSSAPFMSSLRFDYRPLPKLAIRASASSSMSSQFSPLQNHRCRNQR 69

Query: 75  QQPFHVCLAGGKGMM-GSNE-DSRWKSPEAEIEKLKGQSIEDMLRQQIHKQKNXXXXXXX 132
           Q P  VCL GGK    GSNE  S W++ E  + K   +S+EDMLR+QI K+         
Sbjct: 70  QGPV-VCLLGGKDKSNGSNELSSTWEAIEKAMGK---KSVEDMLREQIQKKDTGGIPPRG 125

Query: 133 XXXXXXXXXXXXXSEEGD------FAGLSDEIQQIILATIGFILVYICVIDGVELAKLSK 186
                           G        A   DE  Q++LAT+GFI +Y  +I+G EL +L++
Sbjct: 126 RGGGGGGRNGGNNGSGGSSGEDGGLASFGDETLQVVLATLGFIFLYFYIINGEELFRLAR 185

Query: 187 DILKYLFGGTQSLRLKKAIYKWTRFFKLLTGNRKVLKNE 225
           D ++YL G  +S+RL + +  W+RFF+ ++  RK + NE
Sbjct: 186 DYIRYLIGRPKSVRLTRVMEGWSRFFEKMS--RKKVYNE 222


>AT3G59640.1 | Symbols:  | glycine-rich protein |
           chr3:22029101-22030300 FORWARD LENGTH=246
          Length = 246

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 22/219 (10%)

Query: 23  KPVIPVKNKSQSHHFTSLPCISSM--NAFPLSRTSLRPGARPAFGLPYLPVL------KS 74
           +P +     +Q+ H +S P +SS+  +  PL + ++R  A  +    + P+       + 
Sbjct: 10  RPSLFCARTTQTRHVSSAPFMSSLRFDYRPLPKLAIRASASSSMSSQFSPLQNHRCRNQR 69

Query: 75  QQPFHVCLAGGKGMM-GSNE-DSRWKSPEAEIEKLKGQSIEDMLRQQIHKQKNXXXXXXX 132
           Q P  VCL GGK    GSNE  S W++ E  + K   +S+EDMLR+QI K+         
Sbjct: 70  QGPV-VCLLGGKDKSNGSNELSSTWEAIEKAMGK---KSVEDMLREQIQKKDTGGIPPRG 125

Query: 133 XXXXXXXXXXXXXSEEGD------FAGLSDEIQQIILATIGFILVYICVIDGVELAKLSK 186
                           G        A   DE  Q++LAT+GFI +Y  +I+G EL +L++
Sbjct: 126 RGGGGGGRNGGNNGSGGSSGEDGGLASFGDETLQVVLATLGFIFLYFYIINGEELFRLAR 185

Query: 187 DILKYLFGGTQSLRLKKAIYKWTRFFKLLTGNRKVLKNE 225
           D ++YL G  +S+RL + +  W+RFF+ ++  RK + NE
Sbjct: 186 DYIRYLIGRPKSVRLTRVMEGWSRFFEKMS--RKKVYNE 222