Miyakogusa Predicted Gene

Lj2g3v0167090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0167090.1 Non Chatacterized Hit- tr|K3YW91|K3YW91_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si018537,60.32,3e-17,seg,NULL,gene.g38556.t1.1
         (292 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02420.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   162   2e-40

>AT3G02420.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: membrane;
           EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15
           growth stages; CONTAINS InterPro DOMAIN/s:
           Uncharacterised protein family UPF0121
           (InterPro:IPR005344); Has 72 Blast hits to 71 proteins
           in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2;
           Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes -
           8 (source: NCBI BLink). | chr3:496179-498772 REVERSE
           LENGTH=348
          Length = 348

 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/251 (43%), Positives = 133/251 (52%), Gaps = 23/251 (9%)

Query: 1   MASRSDVVSHYKRKFYQRHVDPDLVVEPMNFGXXXXXXX--XXXXXXXXXXXXXNDQVXX 58
           MASR +VV H+KRKFYQR++DPDLVVEPM+                        N+QV  
Sbjct: 40  MASRPEVVDHFKRKFYQRYIDPDLVVEPMSTSSSSSQSARPTATSASSTASSNANEQVRS 99

Query: 59  XXXXXXXXXXXXXXXXXPNSTPLRWDRQTILFSVNAWXXXXXXXXXXXXXXRHLSQRAYR 118
                               + +RWD QTI FSVNAW              ++LS RAYR
Sbjct: 100 RNSGSVPRTSGPSATTGATPSSMRWDEQTIQFSVNAWVFVIAVLAVLPLIPKNLSNRAYR 159

Query: 119 LSFMGTTCSSLYSLYSQYGIMFDEVNLLKLTSNFDEV---KLFLRGKWDRKLPKVISNIS 175
           LSFMGT CSSLYSLYS YG      N+  L   F  +   K F+           ++ ++
Sbjct: 160 LSFMGTACSSLYSLYSLYG-RPRAWNMQGLQVYFQSIVAAKDFI------YFIYCLTFVT 212

Query: 176 DHMGATAKTIVLATAVAFALIPIICWAFENVAKFLRRNFSRSTLYRKYLEEPCVWVESNN 235
            H+            + FALIPI+C A E VAKFLRRNF RST+YRKYLE+PCVWVESN 
Sbjct: 213 SHL-----------CLKFALIPILCRALEQVAKFLRRNFGRSTIYRKYLEDPCVWVESNT 261

Query: 236 MTLNILTSHAE 246
            TLNIL+S AE
Sbjct: 262 TTLNILSSQAE 272