Miyakogusa Predicted Gene

Lj2g3v0156870.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0156870.3 Non Chatacterized Hit- tr|I1JDH7|I1JDH7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48939
PE,86.63,0,Metallo-beta-lactamase superfamily,Beta-lactamase-like;
INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE,CUFF.34348.3
         (236 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage ...   354   4e-98
AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation s...   148   3e-36
AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation s...   148   3e-36
AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation s...   148   3e-36
AT5G23880.1 | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleav...    67   7e-12

>AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage and
           polyadenylation specificity factor 73 kDa subunit-II |
           chr2:320597-323845 FORWARD LENGTH=613
          Length = 613

 Score =  354 bits (908), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 164/202 (81%), Positives = 184/202 (91%)

Query: 1   MAIETLVLGAGQEGGKSCVVVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYDAAL 60
           MAI+ LVLGAGQE GKSCVVVTINGK+IMFDCGMHMG  DH RYP+FSLIS  G +D A+
Sbjct: 1   MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60

Query: 61  SCIIITHFHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELF 120
           SCIIITHFH+DHVGAL YFTEVCGY GPIYM+YPTKAL+PLMLEDYR+VMVDRRGEEELF
Sbjct: 61  SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120

Query: 121 TSENIAECIKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNM 180
           T+ +IA C+KKVIAIDL+QT+QVDEDLQIRAYYAGHV+GA M YAK+GDA +VYTGDYNM
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180

Query: 181 TADRHLEAAQIDRLRLDLLITE 202
           T DRHL AA+IDRL+LDLLI+E
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISE 202


>AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 121/199 (60%), Gaps = 15/199 (7%)

Query: 8   LGAGQEGGKSCVVVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYD----AALSCI 63
           LGAG E G+SCV ++  GK I+FDCG+H         P +S +++  ++D    +++  +
Sbjct: 27  LGAGSEVGRSCVYMSFRGKNILFDCGIH---------PAYSGMAALPYFDEIDPSSIDVL 77

Query: 64  IITHFHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELFTSE 123
           +ITHFH+DH  +L YF E   + G ++MT+ TKA+  L+L DY KV      E+ LF  +
Sbjct: 78  LITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQ 136

Query: 124 NIAECIKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTAD 183
           +I + + K+  ID  QTV+V+  ++   Y AGHV+GAAMF   +    ++YTGDY+   D
Sbjct: 137 DINKSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREED 195

Query: 184 RHLEAAQIDRLRLDLLITE 202
           RHL AA++ +   D+ I E
Sbjct: 196 RHLRAAELPQFSPDICIIE 214


>AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 121/199 (60%), Gaps = 15/199 (7%)

Query: 8   LGAGQEGGKSCVVVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYD----AALSCI 63
           LGAG E G+SCV ++  GK I+FDCG+H         P +S +++  ++D    +++  +
Sbjct: 27  LGAGSEVGRSCVYMSFRGKNILFDCGIH---------PAYSGMAALPYFDEIDPSSIDVL 77

Query: 64  IITHFHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELFTSE 123
           +ITHFH+DH  +L YF E   + G ++MT+ TKA+  L+L DY KV      E+ LF  +
Sbjct: 78  LITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQ 136

Query: 124 NIAECIKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTAD 183
           +I + + K+  ID  QTV+V+  ++   Y AGHV+GAAMF   +    ++YTGDY+   D
Sbjct: 137 DINKSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREED 195

Query: 184 RHLEAAQIDRLRLDLLITE 202
           RHL AA++ +   D+ I E
Sbjct: 196 RHLRAAELPQFSPDICIIE 214


>AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 121/199 (60%), Gaps = 15/199 (7%)

Query: 8   LGAGQEGGKSCVVVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYD----AALSCI 63
           LGAG E G+SCV ++  GK I+FDCG+H         P +S +++  ++D    +++  +
Sbjct: 27  LGAGSEVGRSCVYMSFRGKNILFDCGIH---------PAYSGMAALPYFDEIDPSSIDVL 77

Query: 64  IITHFHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELFTSE 123
           +ITHFH+DH  +L YF E   + G ++MT+ TKA+  L+L DY KV      E+ LF  +
Sbjct: 78  LITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQ 136

Query: 124 NIAECIKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTAD 183
           +I + + K+  ID  QTV+V+  ++   Y AGHV+GAAMF   +    ++YTGDY+   D
Sbjct: 137 DINKSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREED 195

Query: 184 RHLEAAQIDRLRLDLLITE 202
           RHL AA++ +   D+ I E
Sbjct: 196 RHLRAAELPQFSPDICIIE 214


>AT5G23880.1 | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleavage
           and polyadenylation specificity factor 100 |
           chr5:8052550-8058147 FORWARD LENGTH=739
          Length = 739

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 18/190 (9%)

Query: 20  VVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYDAALSCIIITHFHLDHVGALAYF 79
           +V+I+G   + DCG +          D SL+       + +  ++++H    H+GAL Y 
Sbjct: 22  LVSIDGFNFLIDCGWNDLF-------DTSLLEPLSRVASTIDAVLLSHPDTLHIGALPYA 74

Query: 80  TEVCGYRGPIYMTYPTKALAPLMLEDY---RKVMVDRRGEEELFTSENIAECIKKVIAID 136
            +  G   P+Y T P   L  L + D    RK + D     +LFT ++I    + VI + 
Sbjct: 75  MKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDF----DLFTLDDIDSAFQNVIRLT 130

Query: 137 LRQTVQVD---EDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTADRHLEAAQIDR 193
             Q   +    E + I  + AGH++G +++       +++Y  DYN   +RHL    +  
Sbjct: 131 YSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKERHLNGTVLQS 190

Query: 194 -LRLDLLITE 202
            +R  +LIT+
Sbjct: 191 FVRPAVLITD 200