Miyakogusa Predicted Gene
- Lj2g3v0156870.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0156870.1 Non Chatacterized Hit- tr|I1JDH7|I1JDH7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48939
PE,78.55,0,Metallo-beta-lactamase superfamily,Beta-lactamase-like;
Beta-Casp domain,Beta-Casp domain; INTEGRATO,CUFF.34348.1
(566 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage ... 788 0.0
AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation s... 290 1e-78
AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation s... 290 1e-78
AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation s... 290 1e-78
AT5G23880.1 | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleav... 145 6e-35
>AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage and
polyadenylation specificity factor 73 kDa subunit-II |
chr2:320597-323845 FORWARD LENGTH=613
Length = 613
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/566 (67%), Positives = 441/566 (77%), Gaps = 50/566 (8%)
Query: 1 MAIETLVLGAGQEGGKSCVVVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYDAAL 60
MAI+ LVLGAGQE GKSCVVVTINGK+IMFDCGMHMG DH RYP+FSLIS G +D A+
Sbjct: 1 MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60
Query: 61 SCIIITHFHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELF 120
SCIIITHFH+DHVGAL YFTEVCGY GPIYM+YPTKAL+PLMLEDYR+VMVDRRGEEELF
Sbjct: 61 SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120
Query: 121 TSENIAECIKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNM 180
T+ +IA C+KKVIAIDL+QT+QVDEDLQIRAYYAGHV+GA M YAK+GDA +VYTGDYNM
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180
Query: 181 TADRHLEAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKVVHKCVSGGGKVLIPTFA 240
T DRHL AA+IDRL+LDLLI+ESTYATTIR SKY REREFL+ VHKCV+GGGK LIP+FA
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFA 240
Query: 241 LGRAQELCILLDDYWERMNLKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYSTHNAFD 300
LGRAQELC+LLDDYWERMN+KVPIYFS+GLTIQANMYYKMLISWTSQ +K+ ++THN FD
Sbjct: 241 LGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFD 300
Query: 301 FKNVHHFERSMINAPGSCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGH 360
FKNV F+RS+I+APG CVLFATPGM+ GFSLEVFKHWAPS NL+ LPGY VAGTVGH
Sbjct: 301 FKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGH 360
Query: 361 RLMSGKATKVDVDPETQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKI 420
+LM+GK T VD+ T++DVRC++HQ+AFSPHTD+KGIMDL KFLSPK+V+LVHGEKP +
Sbjct: 361 KLMAGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDLTKFLSPKNVVLVHGEKPSM 420
Query: 421 ALLKEKIHSELGIPCHDPANHETICISSTPYVKTEASGTFIQNCLNPNFKFQKCSSVDEC 480
+LKEKI SEL IPC PAN ET+ +ST Y+K AS F+++C NPNFKF + +
Sbjct: 421 MILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKSCSNPNFKFSNSTQLRVT 480
Query: 481 DSTLTEKNLMPELQVKNCLNPNFKFQKCSSVDECDSTLTEKNLMPELQVKDERVAEGVLV 540
D + L+ E
Sbjct: 481 DHRTADGVLVIE------------------------------------------------ 492
Query: 541 MEKTKKAKIVHQDELLLMLGEKKQGV 566
K+KKAKIVHQDE+ +L EK V
Sbjct: 493 --KSKKAKIVHQDEISEVLHEKNHVV 516
>AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation
specificity factor 73-I | chr1:22474954-22477660 REVERSE
LENGTH=693
Length = 693
Score = 290 bits (743), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 247/431 (57%), Gaps = 19/431 (4%)
Query: 8 LGAGQEGGKSCVVVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYD----AALSCI 63
LGAG E G+SCV ++ GK I+FDCG+H P +S +++ ++D +++ +
Sbjct: 27 LGAGSEVGRSCVYMSFRGKNILFDCGIH---------PAYSGMAALPYFDEIDPSSIDVL 77
Query: 64 IITHFHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELFTSE 123
+ITHFH+DH +L YF E + G ++MT+ TKA+ L+L DY KV E+ LF +
Sbjct: 78 LITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQ 136
Query: 124 NIAECIKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTAD 183
+I + + K+ ID QTV+V+ ++ Y AGHV+GAAMF + ++YTGDY+ D
Sbjct: 137 DINKSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREED 195
Query: 184 RHLEAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKVVHKCVSGGGKVLIPTFALGR 243
RHL AA++ + D+ I EST + S++ RE+ F V+H V+ GG+VLIP FALGR
Sbjct: 196 RHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGR 255
Query: 244 AQELCILLDDYWERMN--LKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYSTHNAFDF 301
AQEL ++LD+YW +PIY+++ L + Y+ I + +I++ ++ N F F
Sbjct: 256 AQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVF 315
Query: 302 KNVHHFER-SMINAPGSCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGH 360
K++ N G V+ ATPG + G S ++F W + N +PGY V GT+
Sbjct: 316 KHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAK 375
Query: 361 RLMSGKATKVDVDPETQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKI 420
+++ + +V + + Q+H ++FS H D +K L P ++ILVHGE ++
Sbjct: 376 TIIN-EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEM 434
Query: 421 ALLKEKIHSEL 431
LK+K+ +E
Sbjct: 435 MRLKQKLLTEF 445
>AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation
specificity factor 73-I | chr1:22474954-22477660 REVERSE
LENGTH=693
Length = 693
Score = 290 bits (743), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 247/431 (57%), Gaps = 19/431 (4%)
Query: 8 LGAGQEGGKSCVVVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYD----AALSCI 63
LGAG E G+SCV ++ GK I+FDCG+H P +S +++ ++D +++ +
Sbjct: 27 LGAGSEVGRSCVYMSFRGKNILFDCGIH---------PAYSGMAALPYFDEIDPSSIDVL 77
Query: 64 IITHFHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELFTSE 123
+ITHFH+DH +L YF E + G ++MT+ TKA+ L+L DY KV E+ LF +
Sbjct: 78 LITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQ 136
Query: 124 NIAECIKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTAD 183
+I + + K+ ID QTV+V+ ++ Y AGHV+GAAMF + ++YTGDY+ D
Sbjct: 137 DINKSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREED 195
Query: 184 RHLEAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKVVHKCVSGGGKVLIPTFALGR 243
RHL AA++ + D+ I EST + S++ RE+ F V+H V+ GG+VLIP FALGR
Sbjct: 196 RHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGR 255
Query: 244 AQELCILLDDYWERMN--LKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYSTHNAFDF 301
AQEL ++LD+YW +PIY+++ L + Y+ I + +I++ ++ N F F
Sbjct: 256 AQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVF 315
Query: 302 KNVHHFER-SMINAPGSCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGH 360
K++ N G V+ ATPG + G S ++F W + N +PGY V GT+
Sbjct: 316 KHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAK 375
Query: 361 RLMSGKATKVDVDPETQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKI 420
+++ + +V + + Q+H ++FS H D +K L P ++ILVHGE ++
Sbjct: 376 TIIN-EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEM 434
Query: 421 ALLKEKIHSEL 431
LK+K+ +E
Sbjct: 435 MRLKQKLLTEF 445
>AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation
specificity factor 73-I | chr1:22474954-22477660 REVERSE
LENGTH=693
Length = 693
Score = 290 bits (743), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 247/431 (57%), Gaps = 19/431 (4%)
Query: 8 LGAGQEGGKSCVVVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYD----AALSCI 63
LGAG E G+SCV ++ GK I+FDCG+H P +S +++ ++D +++ +
Sbjct: 27 LGAGSEVGRSCVYMSFRGKNILFDCGIH---------PAYSGMAALPYFDEIDPSSIDVL 77
Query: 64 IITHFHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELFTSE 123
+ITHFH+DH +L YF E + G ++MT+ TKA+ L+L DY KV E+ LF +
Sbjct: 78 LITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQ 136
Query: 124 NIAECIKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTAD 183
+I + + K+ ID QTV+V+ ++ Y AGHV+GAAMF + ++YTGDY+ D
Sbjct: 137 DINKSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREED 195
Query: 184 RHLEAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKVVHKCVSGGGKVLIPTFALGR 243
RHL AA++ + D+ I EST + S++ RE+ F V+H V+ GG+VLIP FALGR
Sbjct: 196 RHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGR 255
Query: 244 AQELCILLDDYWERMN--LKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYSTHNAFDF 301
AQEL ++LD+YW +PIY+++ L + Y+ I + +I++ ++ N F F
Sbjct: 256 AQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVF 315
Query: 302 KNVHHFER-SMINAPGSCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGH 360
K++ N G V+ ATPG + G S ++F W + N +PGY V GT+
Sbjct: 316 KHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAK 375
Query: 361 RLMSGKATKVDVDPETQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKI 420
+++ + +V + + Q+H ++FS H D +K L P ++ILVHGE ++
Sbjct: 376 TIIN-EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEM 434
Query: 421 ALLKEKIHSEL 431
LK+K+ +E
Sbjct: 435 MRLKQKLLTEF 445
>AT5G23880.1 | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleavage
and polyadenylation specificity factor 100 |
chr5:8052550-8058147 FORWARD LENGTH=739
Length = 739
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 170/363 (46%), Gaps = 24/363 (6%)
Query: 20 VVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYDAALSCIIITHFHLDHVGALAYF 79
+V+I+G + DCG + D SL+ + + ++++H H+GAL Y
Sbjct: 22 LVSIDGFNFLIDCGWNDLF-------DTSLLEPLSRVASTIDAVLLSHPDTLHIGALPYA 74
Query: 80 TEVCGYRGPIYMTYPTKALAPLMLEDY---RKVMVDRRGEEELFTSENIAECIKKVIAID 136
+ G P+Y T P L L + D RK + D +LFT ++I + VI +
Sbjct: 75 MKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDF----DLFTLDDIDSAFQNVIRLT 130
Query: 137 LRQTVQVD---EDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTADRHLEAAQIDR 193
Q + E + I + AGH++G +++ +++Y DYN +RHL +
Sbjct: 131 YSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKERHLNGTVLQS 190
Query: 194 -LRLDLLITESTYAT-TIRDSKYAREREFLKVVHKCVSGGGKVLIPTFALGRAQELCILL 251
+R +LIT++ +A T + ++ R++EFL + K + GG VL+P GR EL ++L
Sbjct: 191 FVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLIL 250
Query: 252 DDYWERMNLKVPIYFSAGLTIQANMYYKMLISWTSQKIKDTYSTH--NAFDFKNVHHF-- 307
+ +W + PIYF ++ Y K + W S I ++ T NAF ++V
Sbjct: 251 EQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAFLLRHVTLLIN 310
Query: 308 ERSMINA-PGSCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGK 366
+ + NA PG V+ A+ + GF+ E+F WA NL+ GT+ L S
Sbjct: 311 KTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFGTLARMLQSAP 370
Query: 367 ATK 369
K
Sbjct: 371 PPK 373