Miyakogusa Predicted Gene

Lj2g3v0156840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0156840.1 tr|G7LAL7|G7LAL7_MEDTR 40S ribosomal protein S2
OS=Medicago truncatula GN=MTR_8g105340 PE=3 SV=1,97.03,0,seg,NULL;
RIBOSOMAL_S5,Ribosomal protein S5, N-terminal, conserved site;
Ribosomal_S5,Ribosomal prot,CUFF.34330.1
         (320 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57490.1 | Symbols:  | Ribosomal protein S5 family protein | ...   422   e-118
AT2G41840.1 | Symbols:  | Ribosomal protein S5 family protein | ...   421   e-118
AT1G58684.1 | Symbols:  | Ribosomal protein S5 family protein | ...   421   e-118
AT1G59359.1 | Symbols:  | Ribosomal protein S5 family protein | ...   421   e-118
AT1G58983.1 | Symbols:  | Ribosomal protein S5 family protein | ...   421   e-118
AT1G58380.1 | Symbols: XW6 | Ribosomal protein S5 family protein...   421   e-118
AT2G33800.1 | Symbols:  | Ribosomal protein S5 family protein | ...    75   8e-14

>AT3G57490.1 | Symbols:  | Ribosomal protein S5 family protein |
           chr3:21279824-21280887 REVERSE LENGTH=276
          Length = 276

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/221 (90%), Positives = 213/221 (96%)

Query: 86  EEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQ 145
           EEEKWVPVTKLGRLV++GKI  +EQIYLHSLP+KE+QIID LVGP+LKDEVMKIMPVQKQ
Sbjct: 41  EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100

Query: 146 TRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIG 205
           TRAGQRTRFKAF+VVGD+NGHVGLGVKCSKEVATAIRG IILAKLSV+P+RRGYWGNKIG
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160

Query: 206 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 265
           KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220

Query: 266 FVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKP 306
           FVKATFDCL KTYGFLTPEFWKETRF+KSP+QE+TD L  P
Sbjct: 221 FVKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIP 261


>AT2G41840.1 | Symbols:  | Ribosomal protein S5 family protein |
           chr2:17460016-17461398 REVERSE LENGTH=285
          Length = 285

 Score =  421 bits (1083), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/219 (91%), Positives = 210/219 (95%)

Query: 86  EEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQ 145
           EEEKWVPVTKLGRLV  G I+ +EQIYLHSLP+KE+QIID L+GPTLKDEVMKIMPVQKQ
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109

Query: 146 TRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIG 205
           TRAGQRTRFKAFVVVGD NGHVGLGVKCSKEVATAIRG IILAKLSV+PVRRGYWGNKIG
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169

Query: 206 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 265
           KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229

Query: 266 FVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEYTDLLA 304
           FVKATFDCL KTYGFLTPEFWKETRF++SP+QE+TD LA
Sbjct: 230 FVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLA 268


>AT1G58684.1 | Symbols:  | Ribosomal protein S5 family protein |
           chr1:21770021-21771217 REVERSE LENGTH=284
          Length = 284

 Score =  421 bits (1082), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/233 (87%), Positives = 215/233 (92%), Gaps = 2/233 (0%)

Query: 86  EEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQ 145
           EE KWVPVTKLGRLV D KI  LEQIYLHSLP+KE+QIID LVGPTLKDEVMKIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 146 TRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIG 205
           TRAGQRTRFKAFVVVGD NGHVGLGVKCSKEVATAIRG IILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168

Query: 206 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 265
           KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228

Query: 266 FVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKP--TAKALILEEE 316
           FVKATFDCL KTYGFLTPEFWKETRF++SP+QE+TD L+    +A  +I E E
Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKVITEGE 281


>AT1G59359.1 | Symbols:  | Ribosomal protein S5 family protein |
           chr1:21842537-21843733 REVERSE LENGTH=284
          Length = 284

 Score =  421 bits (1082), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/233 (87%), Positives = 215/233 (92%), Gaps = 2/233 (0%)

Query: 86  EEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQ 145
           EE KWVPVTKLGRLV D KI  LEQIYLHSLP+KE+QIID LVGPTLKDEVMKIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 146 TRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIG 205
           TRAGQRTRFKAFVVVGD NGHVGLGVKCSKEVATAIRG IILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168

Query: 206 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 265
           KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228

Query: 266 FVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKP--TAKALILEEE 316
           FVKATFDCL KTYGFLTPEFWKETRF++SP+QE+TD L+    +A  +I E E
Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKVITEGE 281


>AT1G58983.1 | Symbols:  | Ribosomal protein S5 family protein |
           chr1:21806279-21807475 REVERSE LENGTH=284
          Length = 284

 Score =  421 bits (1082), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/233 (87%), Positives = 215/233 (92%), Gaps = 2/233 (0%)

Query: 86  EEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQ 145
           EE KWVPVTKLGRLV D KI  LEQIYLHSLP+KE+QIID LVGPTLKDEVMKIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 146 TRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIG 205
           TRAGQRTRFKAFVVVGD NGHVGLGVKCSKEVATAIRG IILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168

Query: 206 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 265
           KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228

Query: 266 FVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKP--TAKALILEEE 316
           FVKATFDCL KTYGFLTPEFWKETRF++SP+QE+TD L+    +A  +I E E
Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKVITEGE 281


>AT1G58380.1 | Symbols: XW6 | Ribosomal protein S5 family protein |
           chr1:21689115-21690085 FORWARD LENGTH=284
          Length = 284

 Score =  421 bits (1081), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/233 (87%), Positives = 215/233 (92%), Gaps = 2/233 (0%)

Query: 86  EEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQ 145
           EE KWVPVTKLGRLV D KI  LEQIYLHSLP+KE+QIID LVGPTLKDEVMKIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 146 TRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIG 205
           TRAGQRTRFKAFVVVGD NGHVGLGVKCSKEVATAIRG IILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168

Query: 206 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 265
           KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228

Query: 266 FVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKP--TAKALILEEE 316
           FVKATFDCL KTYGFLTPEFWKETRF++SP+QE+TD L+    +A  +I E E
Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKVITEGE 281


>AT2G33800.1 | Symbols:  | Ribosomal protein S5 family protein |
           chr2:14300925-14302352 REVERSE LENGTH=303
          Length = 303

 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 17/165 (10%)

Query: 132 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLS 191
            ++ V+++  V K  + G++ +F+A VVVGD  G+VG+G   +KEV  A++   I A+ +
Sbjct: 147 FEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRN 206

Query: 192 VIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDD 251
           ++ V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++
Sbjct: 207 IVQV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVEN 259

Query: 252 VFTSSRGSTKTLGNFVKAT---------FDCLLKTYGFLTPEFWK 287
                 GS   L N  +AT         F  + +  G    E WK
Sbjct: 260 ALGKQLGSNNALNN-ARATLAAVQQMRQFRDVAQERGIPMEELWK 303