Miyakogusa Predicted Gene

Lj2g3v0146660.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0146660.1 Non Chatacterized Hit- tr|D7MFT6|D7MFT6_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,37.78,1e-17,seg,NULL,CUFF.34326.1
         (280 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33945.1 | Symbols:  | ARM repeat superfamily protein | chr4:...    93   2e-19

>AT4G33945.1 | Symbols:  | ARM repeat superfamily protein |
           chr4:16268119-16270514 FORWARD LENGTH=464
          Length = 464

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 3/135 (2%)

Query: 144 KFLENFFMKVQFDIRGVFCCSQVGYDNATGIHDVYVIVPALSTPDNNKVVTLEVYVYARK 203
           + ++  FM+++ D         +  ++ T I  +Y  + AL TPD+ +VV  +VY YAR 
Sbjct: 195 EVVKQLFMELKID---ELILQVLNRESKTTIRALYDAICALLTPDDFRVVASQVYGYART 251

Query: 204 SSEIGIVEAIVDLLHPGLSSPDLVFTCITFKNIAVDDELCNFITVTCGIDAVLRYMNDSG 263
            +++GI  A+ + L  G+ S  LV      K IAV+DE+C  I  + GID +LR ++DSG
Sbjct: 252 FAKLGIATALTEALQAGIGSDSLVSASTALKAIAVNDEICKSIAESGGIDTLLRCIDDSG 311

Query: 264 AQGNKVVITDCCTLF 278
            QGNK     CC+L 
Sbjct: 312 EQGNKTAAKTCCSLL 326