Miyakogusa Predicted Gene

Lj2g3v0146570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0146570.1 tr|A9U113|A9U113_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_173097,41.18,0.000000000000002,seg,NULL,CUFF.34268.1
         (187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26750.1 | Symbols:  | unknown protein; Has 44 Blast hits to ...   154   3e-38

>AT1G26750.1 | Symbols:  | unknown protein; Has 44 Blast hits to 44
           proteins in 16 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:9246857-9248053 FORWARD LENGTH=195
          Length = 195

 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 104/185 (56%)

Query: 1   MSFMKGDLLSRTRKLVKGLAKAEPVWLKAMEQAPPATFPRAGDKIQTITLPEDVYVKKFY 60
           MS+MKGDLLS+TR+LV GLA  EPVWLKAME +PP  FPR+  KIQ I LPED YV+KF 
Sbjct: 1   MSWMKGDLLSKTRRLVGGLATREPVWLKAMEASPPPVFPRSNGKIQKIVLPEDPYVRKFA 60

Query: 61  KKYPESKYHDPIKFCAFDPPPSRLFALRVLELKEHGISEEQAMSVADTXXXXXXXXXXXX 120
            K+P +K  DP K  AF P  +R++  RVLELKEHGISE  AMSVA+             
Sbjct: 61  NKHPGTKIDDPAKISAFIPDQARVYGCRVLELKEHGISEGDAMSVANMEYLSERKEMKKA 120

Query: 121 XXXXXXIAHLQGKRXXXXXXXXXIKEIQAEERKYVRDRFFNPKIHEIVKQKKAEAESFRS 180
                 +A +Q K           K +  + +   +DRF  P +  +V Q K E +    
Sbjct: 121 YKRLKELAVMQDKDPPPKPYPSAKKGLITQSKTSAKDRFQTPSVRRLVNQLKNEKDVLLQ 180

Query: 181 GFRGG 185
              GG
Sbjct: 181 DRTGG 185