Miyakogusa Predicted Gene

Lj2g3v0093580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0093580.1 tr|G7L911|G7L911_MEDTR B3 domain-containing
protein OS=Medicago truncatula GN=MTR_8g103940 PE=4
SV=1,53.95,0.00000000002,B3,B3 DNA binding domain; DNA-binding
pseudobarrel domain,DNA-binding pseudobarrel domain; no
descri,CUFF.34199.1
         (95 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    49   8e-07
AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional...    48   2e-06

>AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:16047357-16049310 REVERSE LENGTH=337
          Length = 337

 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 2   ILYVIDGRTWHVKYLL----RRGTISAGWKKFASDNNLKVGDVCVFE 44
           ++  +D   W +K+ +      G IS GWKKF  DNNL+ GDVCVFE
Sbjct: 256 VVMQVDQTKWEMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFE 302


>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
           factor family protein | chr3:6549077-6551568 REVERSE
           LENGTH=341
          Length = 341

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 9   RTWHVKYLLR--RGTISAGWKKFASDNNLKVGDVCVFELTKNNLFLSKYQSFHLGE 62
           + W V+ L +  R   S GW +F  +NNL  GDVCVFEL +   F+ K  +F + E
Sbjct: 284 KQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 339