Miyakogusa Predicted Gene

Lj2g3v0092560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0092560.1 tr|Q6R2U8|Q6R2U8_BRACM Reduced vernalization
response 1 OS=Brassica campestris PE=2 SV=1,24.92,2e-18,B3,B3 DNA
binding domain; no description,DNA-binding pseudobarrel domain;
DNA-binding pseudobarrel d,gene.g38393.t1.1
         (391 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional...   104   1e-22
AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    65   6e-11
AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr1...    65   6e-11
AT3G18960.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    61   1e-09
AT1G49475.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    60   3e-09
AT4G01580.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    59   8e-09

>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
           factor family protein | chr3:6549077-6551568 REVERSE
           LENGTH=341
          Length = 341

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 140/310 (45%), Gaps = 24/310 (7%)

Query: 1   MSNPVILKPPDDTKWEIHWSKHDSEIWFQKGLKEFAKYYSLDHGHLVLFEFKDASNFEVR 60
           +S  V L  PD   W +   K D++IWFQ G +EF   YS+  G+L++F ++  S F V 
Sbjct: 34  LSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVY 93

Query: 61  IFGKGTLEIEYPMIHGNQDEQNNN------LDQMSDNSVEIL--DELPPCKKTRLKSPIS 112
           IF     EI Y    G  D  +N+       + + D   E++    + P        P +
Sbjct: 94  IFNLSHSEINYHST-GLMDSAHNHFKRARLFEDLEDEDAEVIFPSSVYPSPLPESTVPAN 152

Query: 113 KTQPHRKLRAGITGDVGSSSRLKNYSKQVKVEGNQSQDANFEKSTFEPDQNKLEENM--- 169
           K      ++   TG V +        K  K  G + ++A+ E+      ++   EN    
Sbjct: 153 KGYASSAIQTLFTGPVKAEEPTPT-PKIPKKRGRKKKNADPEEINSSAPRDDDPENRSKF 211

Query: 170 --DGTSGFEHLTPKITE-GLKRGTTLRSINPSFKIVMKSSYI-GGYSLHIPSKFAETYLK 225
               ++    +T +  E  +    T    NP F++V++ SY+  G  +++PS FAE YL 
Sbjct: 212 YESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLS 271

Query: 226 KKDGDIFLEVLDGRSWHGTYDLY-----KIKNGWRQFVLDNNLKAGDVCLFELTKKQPLS 280
              G I +++ + + W     LY     K   GW +F L+NNL  GDVC+FEL + +   
Sbjct: 272 GISGFIKVQLAE-KQW-PVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFV 329

Query: 281 FKVLIFPLEE 290
            KV  F + E
Sbjct: 330 LKVTAFRVNE 339


>AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:16047357-16049310 REVERSE LENGTH=337
          Length = 337

 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 134/303 (44%), Gaps = 52/303 (17%)

Query: 5   VILKPPDDTKWEIHWSKHDSE-IWFQKGLKEFAKYYSLDHGHLVLFEFKDASNFEVRIFG 63
           V LK P    + +   + D + + F+ G  +F K +SL+   L++F+F   S FEV +F 
Sbjct: 55  VTLKSPSGVTYNVGVEEDDEKTMAFRFGWDKFVKDHSLEENDLLVFKFHGVSEFEVLVFD 114

Query: 64  KGTLEIEYPMIHGNQDEQNNNLDQMSDNSVEILDELPPCKKTRLKSPISKTQPHRKLRAG 123
             TL  E P  +                    + +    +KT+      + + H      
Sbjct: 115 GQTL-CEKPTSY-------------------FVRKCGHAEKTKASHTGYEQEEH------ 148

Query: 124 ITGDVGSSSR---LKNYSKQVKVEGNQSQDANFEKSTFEPDQNKLEENMDGTSGFEHLTP 180
           I  D+ ++S    + + +  V+V   +   + F+K   E   + L++  D          
Sbjct: 149 INSDIDTASAQLPVISPTSTVRVSEGKYPLSGFKKMRRELSNDNLDQKAD--------VE 200

Query: 181 KITEGL-KRGTTL--RSINPS-FKIVMKSSYIGGYS-LHIPSKFAETYLKKKDGDIFLEV 235
            I+ G  K+  +L  R+I+P  F + MK S++     L IP K+    +     ++ ++V
Sbjct: 201 MISAGSNKKALSLAKRAISPDGFLVFMKRSHVVSKCFLTIPYKWCVKNMLITRQEVVMQV 260

Query: 236 LDGRSWHGTYDLYK------IKNGWRQFVLDNNLKAGDVCLFE--LTKKQPLSFKVLIFP 287
            D   W   ++++       I  GW++FV DNNL+ GDVC+FE   ++ +PL   V IF 
Sbjct: 261 -DQTKWEMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFR 319

Query: 288 LEE 290
            EE
Sbjct: 320 GEE 322


>AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 |
           chr1:18314596-18315460 REVERSE LENGTH=226
          Length = 226

 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 8/106 (7%)

Query: 191 TLRSINPSFKIVMKSSYI-GGYSLHIPSKFAETYLKKKDGDIFLEVLDGRSWHGTYDLYK 249
           T    NP F++V++ SY+  G  +++PS FAE YL    G I L+ L  + W     LYK
Sbjct: 121 TFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQ-LGEKQWP-VRCLYK 178

Query: 250 -----IKNGWRQFVLDNNLKAGDVCLFELTKKQPLSFKVLIFPLEE 290
                   GW +F L+NN+  GDVC+FEL + +    +V  F + E
Sbjct: 179 AGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFRVNE 224


>AT3G18960.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr3:6542618-6543568 FORWARD LENGTH=209
          Length = 209

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 43/73 (58%)

Query: 1   MSNPVILKPPDDTKWEIHWSKHDSEIWFQKGLKEFAKYYSLDHGHLVLFEFKDASNFEVR 60
           +S  V L+ P   K  I   +   EIWF +G  EFA+ +S++ GH +LFE+K+ S+F V 
Sbjct: 58  LSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVI 117

Query: 61  IFGKGTLEIEYPM 73
           IF     E +YP+
Sbjct: 118 IFNVSACETKYPL 130


>AT1G49475.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr1:18312983-18313748 FORWARD LENGTH=190
          Length = 190

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 12/98 (12%)

Query: 1   MSNPVILKPPDDTKWEIHWSKHDSEIWFQKGLKEFAKYYSLDHGHLVLFEFKDASNFEVR 60
           +++ V L+ P   K  I   +   E+WF+KG  EFA+ +SL  GH + F ++  S F V 
Sbjct: 61  LTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVV 120

Query: 61  IFGKGTLEIEYPMIHGNQDEQNNNLDQMSDNSVEILDE 98
           IF     EIEYP            LD   DN  E++D+
Sbjct: 121 IFDVSASEIEYP------------LDDTDDNREEVMDD 146


>AT4G01580.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:685791-686668 FORWARD LENGTH=190
          Length = 190

 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 40/73 (54%)

Query: 1   MSNPVILKPPDDTKWEIHWSKHDSEIWFQKGLKEFAKYYSLDHGHLVLFEFKDASNFEVR 60
           +S  V L  P   K  I   +   EIWF +G  EFA+ +S++ GH +LFE+K  S+F V 
Sbjct: 58  LSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVI 117

Query: 61  IFGKGTLEIEYPM 73
           IF     E  YP+
Sbjct: 118 IFNASACETNYPL 130