Miyakogusa Predicted Gene

Lj2g3v0044990.3
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0044990.3 Non Chatacterized Hit- tr|I1HM45|I1HM45_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,67.69,3e-19,SNF5,SNF5/SMARCB1/INI1,CUFF.34158.3
         (81 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17590.1 | Symbols: BSH, CHE1 | transcription regulatory prot...   124   9e-30
AT3G17590.2 | Symbols: BSH | transcription regulatory protein SN...   118   1e-27

>AT3G17590.1 | Symbols: BSH, CHE1 | transcription regulatory
          protein SNF5, putative (BSH) | chr3:6017313-6019591
          REVERSE LENGTH=240
          Length = 240

 Score =  124 bits (312), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 66/77 (85%)

Query: 1  MKTPASVFYRNPVKFRMPTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTV 60
          MK   S  ++ PVKFRMPTAENLVPIRLDI+ + +RYKDAFTWNPSDPD+EV +FA+RTV
Sbjct: 1  MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTV 60

Query: 61 KDLKLPPPFVTQIAQSI 77
          KDLKLP  FVTQIAQSI
Sbjct: 61 KDLKLPYAFVTQIAQSI 77


>AT3G17590.2 | Symbols: BSH | transcription regulatory protein
          SNF5, putative (BSH) | chr3:6017313-6019591 REVERSE
          LENGTH=242
          Length = 242

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 66/79 (83%), Gaps = 2/79 (2%)

Query: 1  MKTPASVFYRNPVKFRM--PTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARR 58
          MK   S  ++ PVKFR+  PTAENLVPIRLDI+ + +RYKDAFTWNPSDPD+EV +FA+R
Sbjct: 1  MKGLVSTGWKGPVKFRIYRPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKR 60

Query: 59 TVKDLKLPPPFVTQIAQSI 77
          TVKDLKLP  FVTQIAQSI
Sbjct: 61 TVKDLKLPYAFVTQIAQSI 79