Miyakogusa Predicted Gene

Lj2g3v0044990.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0044990.2 tr|E5GC48|E5GC48_CUCME SNF5-like protein BSH
OS=Cucumis melo subsp. melo PE=4
SV=1,74.55,1e-18,SNF5,SNF5/SMARCB1/INI1; Peptidase_C48,Peptidase C48,
SUMO/Sentrin/Ubl1,CUFF.34158.2
         (105 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17590.1 | Symbols: BSH, CHE1 | transcription regulatory prot...   106   3e-24
AT3G17590.2 | Symbols: BSH | transcription regulatory protein SN...   106   3e-24

>AT3G17590.1 | Symbols: BSH, CHE1 | transcription regulatory protein
           SNF5, putative (BSH) | chr3:6017313-6019591 REVERSE
           LENGTH=240
          Length = 240

 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 46/55 (83%), Positives = 49/55 (89%)

Query: 1   MYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDPEELARIFCKDMGIEDPEVG 55
           MY GEKIIPIKLDL VNH L+KDQFLWDLNNFESDPEE AR  CKD+G+EDPEVG
Sbjct: 92  MYTGEKIIPIKLDLRVNHTLIKDQFLWDLNNFESDPEEFARTLCKDLGVEDPEVG 146


>AT3G17590.2 | Symbols: BSH | transcription regulatory protein SNF5,
           putative (BSH) | chr3:6017313-6019591 REVERSE LENGTH=242
          Length = 242

 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 46/55 (83%), Positives = 49/55 (89%)

Query: 1   MYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDPEELARIFCKDMGIEDPEVG 55
           MY GEKIIPIKLDL VNH L+KDQFLWDLNNFESDPEE AR  CKD+G+EDPEVG
Sbjct: 94  MYTGEKIIPIKLDLRVNHTLIKDQFLWDLNNFESDPEEFARTLCKDLGVEDPEVG 148