Miyakogusa Predicted Gene

Lj2g3v0044780.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0044780.1 tr|B9N0J6|B9N0J6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_783236 PE=4
SV=1,37.09,9e-19,DNA-binding pseudobarrel domain,DNA-binding
pseudobarrel domain; B3,B3 DNA binding domain; no
descri,NODE_40730_length_1571_cov_161.404205.path1.1
         (355 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional...   247   1e-65
AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr1...   231   8e-61
AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    53   4e-07

>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
           factor family protein | chr3:6549077-6551568 REVERSE
           LENGTH=341
          Length = 341

 Score =  247 bits (630), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 148/323 (45%), Positives = 185/323 (57%), Gaps = 71/323 (21%)

Query: 2   YEGNSSFIVHIFNMSTSEVNYQSAVRSRNEGPVFTNYHH-----IFVEMEDTDSFEFMDS 56
           YEGNS+F V+IFN+S SE+NY S       G + + ++H     +F ++ED D+      
Sbjct: 84  YEGNSAFSVYIFNLSHSEINYHST------GLMDSAHNHFKRARLFEDLEDEDAEVIF-- 135

Query: 57  SPSNLTPGSLQNKVFGGSVDQLTPGKNQSPARQNLFNGGSKLNRVNWGDSGSPFPSKDAN 116
            PS++ P                                            SP P     
Sbjct: 136 -PSSVYP--------------------------------------------SPLPESTVP 150

Query: 117 SQGNHSTRDIGVQFNAVEFKRSTEELKLRYPNNEEGVSKTVKRKRK-SEPKTVDGQXXXX 175
           +   +++  I   F        T  +K   P     + K   RK+K ++P+ ++      
Sbjct: 151 ANKGYASSAIQTLF--------TGPVKAEEPTPTPKIPKKRGRKKKNADPEEINSSAPRD 202

Query: 176 XXXXXXXMRYRFYESASARKRTVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIM 235
                   R +FYESASARKRTVTAEERERAIN AK FEP NPF RVVLRPSYLYRGCIM
Sbjct: 203 DDPEN---RSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIM 259

Query: 236 YLPSCFAEKNLNGVSGFIKLQVADGRQWPVRCLYRGGRAKLSQGWFEFTLENNLGEGDVC 295
           YLPS FAEK L+G+SGFIK+Q+A+ +QWPVRCLY+ GRAK SQGW+EFTLENNLGEGDVC
Sbjct: 260 YLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVC 318

Query: 296 VFELLRTRDVVLQVTLFRLTEEV 318
           VFELLRTRD VL+VT FR+ E V
Sbjct: 319 VFELLRTRDFVLKVTAFRVNEYV 341


>AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 |
           chr1:18314596-18315460 REVERSE LENGTH=226
          Length = 226

 Score =  231 bits (588), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 107/135 (79%), Positives = 120/135 (88%), Gaps = 1/135 (0%)

Query: 184 RYRFYESASARKRTVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAE 243
           R +FYESASARKRTVTAEERERA+N AK FEP NP+ RVVLRPSYLYRGCIMYLPS FAE
Sbjct: 93  RSKFYESASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAE 152

Query: 244 KNLNGVSGFIKLQVADGRQWPVRCLYRGGRAKLSQGWFEFTLENNLGEGDVCVFELLRTR 303
           K L+G+SGFIKLQ+ + +QWPVRCLY+ GRAK SQGW+EFTLENN+GEGDVCVFELLRTR
Sbjct: 153 KYLSGISGFIKLQLGE-KQWPVRCLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTR 211

Query: 304 DVVLQVTLFRLTEEV 318
           D VL+VT FR+ E V
Sbjct: 212 DFVLEVTAFRVNEYV 226


>AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:16047357-16049310 REVERSE LENGTH=337
          Length = 337

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 6/125 (4%)

Query: 193 ARKRTVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGF 252
           A    ++A   ++A++ AK     + F  V ++ S++   C + +P  +  KN+      
Sbjct: 197 ADVEMISAGSNKKALSLAKRAISPDGFL-VFMKRSHVVSKCFLTIPYKWCVKNMLITRQE 255

Query: 253 IKLQVADGRQWPVRCLYRGGRAK--LSQGWFEFTLENNLGEGDVCVFELL--RTRDVVLQ 308
           + +QV D  +W ++    G R    +S GW +F  +NNL EGDVCVFE     T+ + L 
Sbjct: 256 VVMQV-DQTKWEMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLHLN 314

Query: 309 VTLFR 313
           V +FR
Sbjct: 315 VYIFR 319