Miyakogusa Predicted Gene

Lj2g3v0039070.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0039070.1 Non Chatacterized Hit- tr|D8T6J0|D8T6J0_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,44.59,4e-18,LysM domain,NULL; seg,NULL; no
description,NULL; LOC443603 PROTEIN-RELATED,NULL,CUFF.34099.1
         (362 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08200.1 | Symbols:  | peptidoglycan-binding LysM domain-cont...   285   3e-77
AT5G23130.1 | Symbols:  | Peptidoglycan-binding LysM domain-cont...   261   6e-70

>AT5G08200.1 | Symbols:  | peptidoglycan-binding LysM
           domain-containing protein | chr5:2638385-2640508 FORWARD
           LENGTH=409
          Length = 409

 Score =  285 bits (730), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 173/343 (50%), Positives = 207/343 (60%), Gaps = 38/343 (11%)

Query: 49  GYIEHPVSKLDTLVGIAIKYGVEVADVKKMNSLVTDHQMFALKILHIPLPGRHPPSPCLS 108
           GYIEH +SK DTL G+AIKYGVEVADVKKMN+LVTD QMFALK L IPLPGRHPPSPCLS
Sbjct: 76  GYIEHRISKFDTLAGVAIKYGVEVADVKKMNNLVTDLQMFALKSLQIPLPGRHPPSPCLS 135

Query: 109 NGSSTPGHGDSDH--SSPDRAHRDLLESFQSLRVKPSERKVSAKVSPAMSSLQGYYGLKX 166
           NGS   G G S H   SP+ + +++ +SFQSLR+K SE+    KVSPAM SLQGYYGLK 
Sbjct: 136 NGSLNHGEGCSCHEPESPNHSEQEVFDSFQSLRLKSSEK----KVSPAMYSLQGYYGLKP 191

Query: 167 XXXXXXXXXXXXXXXM----------------------SERPLSHHRKSKSLVNVILEEI 204
                                                 +  PL+HHRKS+SLVN ++EE+
Sbjct: 192 ADRTVSDGGCFEMGNYKTETSHHIFNNGDNGYLRPFPSTNTPLNHHRKSRSLVNALIEEV 251

Query: 205 MEKSDISLAEGNSNNWNDKLVQRREKSVADF-TRIPELLLKEDNGSS-GGLPSRTGKGLA 262
            +  D +  E  S    DK ++RR+KS ADF +R PEL+LKE+NGSS GG  S  GKGLA
Sbjct: 252 NQSPDNNTQEPTS----DKFMRRRQKSEADFSSRTPELVLKEENGSSNGGFLSIAGKGLA 307

Query: 263 LRQKAASRTAVATDSESSXXXXXXXXXXDAFPXXXXXXXXXXXXXXCLHDQD---NSGCS 319
           LR KA+SRT +A +SE+           DA                 L D D   N+G S
Sbjct: 308 LRSKASSRTNLAAESENGNFNPVSMNLMDAPVSDSFSSVRKSSSASSLQDPDGNSNNG-S 366

Query: 320 SSIWPASMWSLKPDLQARSTAGKPIFDGLPKPISGRRNKAALD 362
            S+WP S WSLKPDL   +     IFDGLPKP++GRRNK ALD
Sbjct: 367 LSLWPTSKWSLKPDLLTPAAITSSIFDGLPKPLTGRRNKTALD 409


>AT5G23130.1 | Symbols:  | Peptidoglycan-binding LysM
           domain-containing protein | chr5:7781475-7783333 FORWARD
           LENGTH=397
          Length = 397

 Score =  261 bits (667), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 155/336 (46%), Positives = 197/336 (58%), Gaps = 28/336 (8%)

Query: 49  GYIEHPVSKLDTLVGIAIKYGVEVADVKKMNSLVTDHQMFALKILHIPLPGRHPPSPCLS 108
           GYIEH VSK DTL GIAIKYGVEVAD+ K+N LVTD QMFAL+ L IPLPGRHPPSPCLS
Sbjct: 68  GYIEHRVSKFDTLAGIAIKYGVEVADITKLNGLVTDLQMFALESLRIPLPGRHPPSPCLS 127

Query: 109 NGSSTPGHGDSDHSSPDRA---HRDLLESFQSLRVKPSERKVSAKVSPAMSSLQGYYGLK 165
           NGS   G   S+ +S   +   H+D+ +SFQSLR+  SE+    K+SPAM+SLQGYYGLK
Sbjct: 128 NGSLNHGEDWSEQASSSASNGNHQDVFDSFQSLRLNHSEK----KISPAMNSLQGYYGLK 183

Query: 166 XXXXXXXXXXXXXXXX-----------------MSERPLSHHRKSKSLVNVILEEIMEKS 208
                                             +  PLSHHRKS+SLV+ ++ E+ +  
Sbjct: 184 PKNRRASEGFGMAVYKNEASQLQDNDQYLTPFPATSTPLSHHRKSRSLVDAVIAEVNQSP 243

Query: 209 DISLAEGNSNNWNDKLVQRREKSVADF-TRIPELLLKEDN-GSSGGLPSRTGKGLALRQK 266
           + S A G   N  DK ++RR+KS ADF +R PELLLKE+N  SSG   +  GK LALR K
Sbjct: 244 NPSKAGGGEVNSTDKPMRRRQKSEADFSSRAPELLLKEENRSSSGAFSAIAGKNLALRSK 303

Query: 267 AASRTAVATDSESSXXXXXXXXXXDAFPXXXXXXXXXXXXXXCLHDQDNSGCSSSIWPAS 326
           A+SR  ++  +E+           DA                 L + + +   SS+WP S
Sbjct: 304 ASSRANLS--AETRHLNSIPINLMDAPVGDSFSSVRKSVSASSLQEPNCNSNGSSLWPTS 361

Query: 327 MWSLKPDLQARSTAGKPIFDGLPKPISGRRNKAALD 362
            W+LKP+L  +      IFDGLPKP++GRRNK A+D
Sbjct: 362 KWTLKPELLTQVAMASSIFDGLPKPLTGRRNKKAVD 397