Miyakogusa Predicted Gene

Lj2g3v0026940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0026940.1 tr|A9SIB2|A9SIB2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_165021,67.21,1e-17,SAM/Pointed domain,Sterile alpha
motif/pointed domain; no description,Sterile alpha motif/pointed
do,CUFF.34085.1
         (263 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24650.1 | Symbols:  | Mitochondrial import inner membrane tr...   235   2e-62
AT3G49560.1 | Symbols:  | Mitochondrial import inner membrane tr...   223   7e-59

>AT5G24650.1 | Symbols:  | Mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein |
           chr5:8437123-8438859 FORWARD LENGTH=259
          Length = 259

 Score =  235 bits (600), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/258 (50%), Positives = 155/258 (60%), Gaps = 9/258 (3%)

Query: 5   KQGVMVAKILPQQLLNPIEQLQTRFKEVESGFKLWLSKQSIXXXXXXXXXXXXXXXXXIG 64
           K+  M    L +   NPI+Q Q +FKE+E+GFK WLSKQ +                 IG
Sbjct: 10  KRETMAVMSLMKDQQNPIQQFQVKFKEIETGFKSWLSKQKLPVEAAVVTAMGGVQGAFIG 69

Query: 65  AFMGTLTGDASSPFPTPPPNASLNPQAMASLNQAQALAGGPLVQARNFAVMTGVNAGITS 124
             MGTL+ +         P A ++PQAMASL Q QAL GGPLVQARNFA +TGVNAGI  
Sbjct: 70  GLMGTLSPEM--------PQAGIDPQAMASLKQTQALVGGPLVQARNFAAITGVNAGIAC 121

Query: 125 VLKRIRGKEDVQXXXXXXXXXXXXXXLVSGVGGPNQAANAVTSGLFFALVQGGLFQLGQK 184
           V+KRIRGKED++              LVS  G   Q  NA+T+   FA+ QG  F+LG++
Sbjct: 122 VMKRIRGKEDLESAVVAAFGSGVAYSLVS-AGLQGQPMNAITTAAGFAVFQGVFFKLGER 180

Query: 185 FSQPPVEDTNYVKTRHMLHNLGLQNYEKHFKKGXXXXXXXXXXXXSALRDVKIPPGPRLL 244
           FS+P VED  Y + R ML  LGL+ YEK+FKKG            SALRDV IPPGPRLL
Sbjct: 181 FSKPSVEDPYYTRGRSMLLKLGLEKYEKNFKKGLLADPTLPLLTDSALRDVSIPPGPRLL 240

Query: 245 ILDHIQRDPDAKEKRGGR 262
           ILDHIQRDP+ K KRG R
Sbjct: 241 ILDHIQRDPELKGKRGSR 258


>AT3G49560.1 | Symbols:  | Mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein |
           chr3:18370644-18371821 FORWARD LENGTH=261
          Length = 261

 Score =  223 bits (569), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 120/240 (50%), Positives = 147/240 (61%), Gaps = 9/240 (3%)

Query: 20  NPIEQLQTRFKEVESGFKLWLSKQSIXXXXXXXXXXXXXXXXXIGAFMGTLTGDASSPFP 79
           NPI+Q Q +FKEVE+ FK WLSKQSI                 IG  MGTL+ +      
Sbjct: 30  NPIQQFQVKFKEVETNFKTWLSKQSIPVEAAVVSTMSGVQGAFIGGLMGTLSPEM----- 84

Query: 80  TPPPNASLNPQAMASLNQAQALAGGPLVQARNFAVMTGVNAGITSVLKRIRGKEDVQXXX 139
              P A ++PQA+AS+ QAQAL GGP VQARNFA +TGVNAGI SV+KRIRGKED++   
Sbjct: 85  ---PQAGVDPQAIASMKQAQALVGGPWVQARNFAAITGVNAGIASVMKRIRGKEDIESAV 141

Query: 140 XXXXXXXXXXXLVSGVGGPNQAANAVTSGLFFALVQGGLFQLGQKFSQPPVEDTNYVKTR 199
                      LVS  G   Q  NA+T+   FA+ QG  F+LG++FS+P  ED  + + R
Sbjct: 142 VAALGSGFAYSLVS-QGLQGQPMNAITTAAGFAVFQGVFFKLGERFSKPSTEDPFFTRGR 200

Query: 200 HMLHNLGLQNYEKHFKKGXXXXXXXXXXXXSALRDVKIPPGPRLLILDHIQRDPDAKEKR 259
            ML  LGL+ YEK+FKKG            SAL+D  IPPGPRL+ILDHIQRDP+ K KR
Sbjct: 201 TMLVKLGLEKYEKNFKKGLLTDPTLPLLTDSALKDANIPPGPRLMILDHIQRDPEIKGKR 260