Miyakogusa Predicted Gene

Lj1g3v5062660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5062660.1 Non Chatacterized Hit- tr|I1JS72|I1JS72_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.39925
PE,71.74,0,Pumilio-like repeats,Pumilio RNA-binding repeat; ARM
repeat,Armadillo-type fold; PUM,Pumilio RNA-bin,CUFF.34029.1
         (740 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72320.1 | Symbols: APUM23, PUM23 | pumilio 23 | chr1:2722898...   682   0.0  
AT1G72320.3 | Symbols: APUM23, PUM23 | pumilio 23 | chr1:2722898...   681   0.0  
AT1G72320.2 | Symbols: APUM23, PUM23 | pumilio 23 | chr1:2722898...   681   0.0  

>AT1G72320.1 | Symbols: APUM23, PUM23 | pumilio 23 |
           chr1:27228984-27232580 REVERSE LENGTH=753
          Length = 753

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/695 (50%), Positives = 464/695 (66%), Gaps = 36/695 (5%)

Query: 1   MVSVGSKAMGHHVHDCESHRRNXXXXXXXXXXXXXPNKGGGSSFHSNKRTF--------- 51
           MVSVGSK++    H                      NKG     H   R F         
Sbjct: 1   MVSVGSKSLPSRRHRTIEEDSLMGERGKSSNNHSERNKGMRRKDHKGNRGFDVDSSKKNQ 60

Query: 52  -------TPASR-----------VRKQIDPETTTYFSEIANXXXXXXXXXXXXXXICANA 93
                   PAS+           VRK+IDPET+ YFSEIAN              IC NA
Sbjct: 61  SGGAPNVKPASKKHSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNA 120

Query: 94  LEETRGKEFEIATDYILSHTLETILQGSDVDSLCAFLKTCANDFPSIATDQSGSHVAQTA 153
           LEETRG+E+EIATDYI+SH L+T+L+G ++D LC+F++  A+ FP+IA D+SGSHVA++A
Sbjct: 121 LEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSASVFPAIAMDRSGSHVAESA 180

Query: 154 INSLALHLQDP----LVEDALTIICKVIAANSVDVMCNCYGSHVLRSLLCLCKGVPLDKT 209
           + SLA HL++P    ++E+AL  ICKVI  N +D+MCNCYGSHVLR LLCLCKGV LD  
Sbjct: 181 LKSLATHLENPDAYSVIEEALHSICKVIVDNPLDMMCNCYGSHVLRRLLCLCKGVSLDSP 240

Query: 210 GYYMSKSTTALADRFNFKDFPSKKDDAADFQSGYPNLLRSLVSEMLKQARKCIKALQVDQ 269
             Y +KS+ ALA R N K      ++      G+P +L  L+S +L  +R+ +K LQVDQ
Sbjct: 241 ELYGAKSSKALAKRLNLKMSQLDDNNLEIPHQGFPGMLTYLLSGLLSCSREDMKYLQVDQ 300

Query: 270 FSSLVFQTTLRVLAGNDEELLHVIPVILGCKNQNN-AEGNFIETTVVPQLLSLFKEAEFS 328
           +SSLV QT LR++   DE+LL +IP+IL C + N   EG  IET V  ++L   K+  FS
Sbjct: 301 YSSLVLQTALRLMLKQDEQLLEIIPLILRCNSTNKKVEGFHIETNVAKEILESMKDNSFS 360

Query: 329 HLMEVVLEVSPKALFNELFTKVFRNSLFELSSHQHGNFVVQALISHANNQDLMELIYEEL 388
           HL+EV+LEV+P++L+NE+F KVF+NSLFELS  +  NFV+QALISHA +Q+ M +++EEL
Sbjct: 361 HLVEVILEVAPESLYNEMFNKVFKNSLFELSVDRCANFVIQALISHARDQEQMGIMWEEL 420

Query: 389 APNMEGLFQMGRSGVVASLIAACERLHVNEHKCCEVLAKTVCLADDSPKWIVPRLLFLDS 448
           AP  + L + G+SGVVASLIA  +RL  +E+KCCE L   VC  ++S   I+PRLLFLD 
Sbjct: 421 APRFKDLLEQGKSGVVASLIAVSQRLQSHENKCCEALVGAVCSTNESRISILPRLLFLDY 480

Query: 449 YFTCEDKSNWSWRSGARMNVMGSLILQAIFRFKSEYIQPYITSITSMEATHVLEAVRDAK 508
           YF C DKS W W  GA+M+VMG LILQ IF+F S++IQPYITS+TSM+A ++ E  +D+ 
Sbjct: 481 YFGCRDKSTWEWAPGAKMHVMGCLILQGIFKFSSDHIQPYITSLTSMKAEYITETAKDSS 540

Query: 509 GSHVIEAFLCSGASGKQKRRLVTKLQSHFGEVALNSSGAFTIEKCFTSCNLSLREAIVSE 568
           G+ VIEAFL S A+ KQKRRL+ KL+ HFGE++L++SG+FT+EKCF +CNL+LREAI SE
Sbjct: 541 GARVIEAFLASDAATKQKRRLIIKLRGHFGELSLHTSGSFTVEKCFDACNLTLREAIASE 600

Query: 569 ILAVRSELSKTKQGSYLLRRLDVDGYVTSPDHWRSKQTSKESTYKDFYATFGSNDTKSSK 628
           +L V+ +LSKTKQG YLLR+LD+DGY + PD W+S+Q +K+STY +F + FGSN +   K
Sbjct: 601 LLDVKVDLSKTKQGPYLLRKLDIDGYASRPDQWKSRQEAKQSTYNEFCSAFGSNKSNFPK 660

Query: 629 TDGFLSDTFSKSNPKT-VKEMRKEIDQSLGPAASF 662
            + F+SD    +  +  VK  RKEID    P + F
Sbjct: 661 -NTFVSDASEDAAQEIEVKNTRKEIDHH--PTSGF 692


>AT1G72320.3 | Symbols: APUM23, PUM23 | pumilio 23 |
           chr1:27228984-27232514 REVERSE LENGTH=731
          Length = 731

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/612 (54%), Positives = 444/612 (72%), Gaps = 9/612 (1%)

Query: 57  VRKQIDPETTTYFSEIANXXXXXXXXXXXXXXICANALEETRGKEFEIATDYILSHTLET 116
           VRK+IDPET+ YFSEIAN              IC NALEETRG+E+EIATDYI+SH L+T
Sbjct: 62  VRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQT 121

Query: 117 ILQGSDVDSLCAFLKTCANDFPSIATDQSGSHVAQTAINSLALHLQDP----LVEDALTI 172
           +L+G ++D LC+F++  A+ FP+IA D+SGSHVA++A+ SLA HL++P    ++E+AL  
Sbjct: 122 LLEGCELDQLCSFIRNSASVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALHS 181

Query: 173 ICKVIAANSVDVMCNCYGSHVLRSLLCLCKGVPLDKTGYYMSKSTTALADRFNFKDFPSK 232
           ICKVI  N +D+MCNCYGSHVLR LLCLCKGV LD    Y +KS+ ALA R N K     
Sbjct: 182 ICKVIVDNPLDMMCNCYGSHVLRRLLCLCKGVSLDSPELYGAKSSKALAKRLNLKMSQLD 241

Query: 233 KDDAADFQSGYPNLLRSLVSEMLKQARKCIKALQVDQFSSLVFQTTLRVLAGNDEELLHV 292
            ++      G+P +L  L+S +L  +R+ +K LQVDQ+SSLV QT LR++   DE+LL +
Sbjct: 242 DNNLEIPHQGFPGMLTYLLSGLLSCSREDMKYLQVDQYSSLVLQTALRLMLKQDEQLLEI 301

Query: 293 IPVILGCKNQNN-AEGNFIETTVVPQLLSLFKEAEFSHLMEVVLEVSPKALFNELFTKVF 351
           IP+IL C + N   EG  IET V  ++L   K+  FSHL+EV+LEV+P++L+NE+F KVF
Sbjct: 302 IPLILRCNSTNKKVEGFHIETNVAKEILESMKDNSFSHLVEVILEVAPESLYNEMFNKVF 361

Query: 352 RNSLFELSSHQHGNFVVQALISHANNQDLMELIYEELAPNMEGLFQMGRSGVVASLIAAC 411
           +NSLFELS  +  NFV+QALISHA +Q+ M +++EELAP  + L + G+SGVVASLIA  
Sbjct: 362 KNSLFELSVDRCANFVIQALISHARDQEQMGIMWEELAPRFKDLLEQGKSGVVASLIAVS 421

Query: 412 ERLHVNEHKCCEVLAKTVCLADDSPKWIVPRLLFLDSYFTCEDKSNWSWRSGARMNVMGS 471
           +RL  +E+KCCE L   VC  ++S   I+PRLLFLD YF C DKS W W  GA+M+VMG 
Sbjct: 422 QRLQSHENKCCEALVGAVCSTNESRISILPRLLFLDYYFGCRDKSTWEWAPGAKMHVMGC 481

Query: 472 LILQAIFRFKSEYIQPYITSITSMEATHVLEAVRDAKGSHVIEAFLCSGASGKQKRRLVT 531
           LILQ IF+F S++IQPYITS+TSM+A ++ E  +D+ G+ VIEAFL S A+ KQKRRL+ 
Sbjct: 482 LILQGIFKFSSDHIQPYITSLTSMKAEYITETAKDSSGARVIEAFLASDAATKQKRRLII 541

Query: 532 KLQSHFGEVALNSSGAFTIEKCFTSCNLSLREAIVSEILAVRSELSKTKQGSYLLRRLDV 591
           KL+ HFGE++L++SG+FT+EKCF +CNL+LREAI SE+L V+ +LSKTKQG YLLR+LD+
Sbjct: 542 KLRGHFGELSLHTSGSFTVEKCFDACNLTLREAIASELLDVKVDLSKTKQGPYLLRKLDI 601

Query: 592 DGYVTSPDHWRSKQTSKESTYKDFYATFGSNDTKSSKTDGFLSDTFSKSNPKT-VKEMRK 650
           DGY + PD W+S+Q +K+STY +F + FGSN +   K + F+SD    +  +  VK  RK
Sbjct: 602 DGYASRPDQWKSRQEAKQSTYNEFCSAFGSNKSNFPK-NTFVSDASEDAAQEIEVKNTRK 660

Query: 651 EIDQSLGPAASF 662
           EID    P + F
Sbjct: 661 EIDHH--PTSGF 670


>AT1G72320.2 | Symbols: APUM23, PUM23 | pumilio 23 |
           chr1:27228984-27232514 REVERSE LENGTH=731
          Length = 731

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/612 (54%), Positives = 444/612 (72%), Gaps = 9/612 (1%)

Query: 57  VRKQIDPETTTYFSEIANXXXXXXXXXXXXXXICANALEETRGKEFEIATDYILSHTLET 116
           VRK+IDPET+ YFSEIAN              IC NALEETRG+E+EIATDYI+SH L+T
Sbjct: 62  VRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQT 121

Query: 117 ILQGSDVDSLCAFLKTCANDFPSIATDQSGSHVAQTAINSLALHLQDP----LVEDALTI 172
           +L+G ++D LC+F++  A+ FP+IA D+SGSHVA++A+ SLA HL++P    ++E+AL  
Sbjct: 122 LLEGCELDQLCSFIRNSASVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALHS 181

Query: 173 ICKVIAANSVDVMCNCYGSHVLRSLLCLCKGVPLDKTGYYMSKSTTALADRFNFKDFPSK 232
           ICKVI  N +D+MCNCYGSHVLR LLCLCKGV LD    Y +KS+ ALA R N K     
Sbjct: 182 ICKVIVDNPLDMMCNCYGSHVLRRLLCLCKGVSLDSPELYGAKSSKALAKRLNLKMSQLD 241

Query: 233 KDDAADFQSGYPNLLRSLVSEMLKQARKCIKALQVDQFSSLVFQTTLRVLAGNDEELLHV 292
            ++      G+P +L  L+S +L  +R+ +K LQVDQ+SSLV QT LR++   DE+LL +
Sbjct: 242 DNNLEIPHQGFPGMLTYLLSGLLSCSREDMKYLQVDQYSSLVLQTALRLMLKQDEQLLEI 301

Query: 293 IPVILGCKNQNN-AEGNFIETTVVPQLLSLFKEAEFSHLMEVVLEVSPKALFNELFTKVF 351
           IP+IL C + N   EG  IET V  ++L   K+  FSHL+EV+LEV+P++L+NE+F KVF
Sbjct: 302 IPLILRCNSTNKKVEGFHIETNVAKEILESMKDNSFSHLVEVILEVAPESLYNEMFNKVF 361

Query: 352 RNSLFELSSHQHGNFVVQALISHANNQDLMELIYEELAPNMEGLFQMGRSGVVASLIAAC 411
           +NSLFELS  +  NFV+QALISHA +Q+ M +++EELAP  + L + G+SGVVASLIA  
Sbjct: 362 KNSLFELSVDRCANFVIQALISHARDQEQMGIMWEELAPRFKDLLEQGKSGVVASLIAVS 421

Query: 412 ERLHVNEHKCCEVLAKTVCLADDSPKWIVPRLLFLDSYFTCEDKSNWSWRSGARMNVMGS 471
           +RL  +E+KCCE L   VC  ++S   I+PRLLFLD YF C DKS W W  GA+M+VMG 
Sbjct: 422 QRLQSHENKCCEALVGAVCSTNESRISILPRLLFLDYYFGCRDKSTWEWAPGAKMHVMGC 481

Query: 472 LILQAIFRFKSEYIQPYITSITSMEATHVLEAVRDAKGSHVIEAFLCSGASGKQKRRLVT 531
           LILQ IF+F S++IQPYITS+TSM+A ++ E  +D+ G+ VIEAFL S A+ KQKRRL+ 
Sbjct: 482 LILQGIFKFSSDHIQPYITSLTSMKAEYITETAKDSSGARVIEAFLASDAATKQKRRLII 541

Query: 532 KLQSHFGEVALNSSGAFTIEKCFTSCNLSLREAIVSEILAVRSELSKTKQGSYLLRRLDV 591
           KL+ HFGE++L++SG+FT+EKCF +CNL+LREAI SE+L V+ +LSKTKQG YLLR+LD+
Sbjct: 542 KLRGHFGELSLHTSGSFTVEKCFDACNLTLREAIASELLDVKVDLSKTKQGPYLLRKLDI 601

Query: 592 DGYVTSPDHWRSKQTSKESTYKDFYATFGSNDTKSSKTDGFLSDTFSKSNPKT-VKEMRK 650
           DGY + PD W+S+Q +K+STY +F + FGSN +   K + F+SD    +  +  VK  RK
Sbjct: 602 DGYASRPDQWKSRQEAKQSTYNEFCSAFGSNKSNFPK-NTFVSDASEDAAQEIEVKNTRK 660

Query: 651 EIDQSLGPAASF 662
           EID    P + F
Sbjct: 661 EIDHH--PTSGF 670