Miyakogusa Predicted Gene

Lj1g3v5060970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5060970.1 tr|E3M1D6|E3M1D6_CAERE CRE-RSR-2 protein
OS=Caenorhabditis remanei GN=Cre-rsr-2 PE=4 SV=1,37.41,3e-18,seg,NULL;
coiled-coil,NULL; cwf21,mRNA splicing factor, Cwf21,CUFF.33985.1
         (820 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49601.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   189   5e-48

>AT3G49601.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr3:18387504-18389279
           REVERSE LENGTH=591
          Length = 591

 Score =  189 bits (481), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 122/191 (63%), Gaps = 13/191 (6%)

Query: 1   MYNGIGLQTPRGSGTNGYIQSNKFFVRPKTTKVSDNTKG-FEADQGTAGVTRKPNKEILD 59
           MYNGIGLQT RGSGTNGY+Q+NKFFVRP+           FE D+GTAG+++KPNK IL+
Sbjct: 1   MYNGIGLQTARGSGTNGYVQTNKFFVRPRNGGKPVKGGKGFEDDEGTAGLSKKPNKAILE 60

Query: 60  HDRKRQIQLKLVILEDKLTDQGYTDSEIXXXXXXXXXXXXXXXXXXXXTDGGSNSDKKIS 119
           HDRKRQI LKL ILEDKL DQGY+D EI                          SD K+S
Sbjct: 61  HDRKRQIHLKLAILEDKLADQGYSDIEIAQKLEEARVSLEAAAAANE-----EESDSKVS 115

Query: 120 DTQTHQIAARKEKQMETLKAALGIV-SAEVQEDG-IDDGPGNDGKVGANAEGKHNLKSEH 177
           +TQTHQ+AARKEKQME  +AALG+    +V E+G IDD P  +G      EG+   + EH
Sbjct: 116 NTQTHQVAARKEKQMEAFRAALGLPDQQQVAEEGIIDDEPMREG-----FEGRLKERREH 170

Query: 178 SFLDRDFSLKK 188
           SFLDRD   KK
Sbjct: 171 SFLDRDSGRKK 181