Miyakogusa Predicted Gene

Lj1g3v5060560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5060560.1 Non Chatacterized Hit- tr|E0CVC0|E0CVC0_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,64.86,4e-19,60S
ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER,NULL; Ribosomal_60s,Ribosomal
protein 60S; seg,NULL,CUFF.34230.1
         (110 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24510.1 | Symbols:  | 60S acidic ribosomal protein family | ...    83   5e-17
AT1G01100.3 | Symbols:  | 60S acidic ribosomal protein family | ...    82   1e-16
AT1G01100.4 | Symbols:  | 60S acidic ribosomal protein family | ...    81   1e-16
AT1G01100.2 | Symbols:  | 60S acidic ribosomal protein family | ...    81   1e-16
AT1G01100.1 | Symbols:  | 60S acidic ribosomal protein family | ...    81   1e-16
AT5G47700.2 | Symbols:  | 60S acidic ribosomal protein family | ...    81   1e-16
AT5G47700.1 | Symbols:  | 60S acidic ribosomal protein family | ...    81   1e-16
AT4G00810.2 | Symbols:  | 60S acidic ribosomal protein family | ...    81   2e-16
AT4G00810.1 | Symbols:  | 60S acidic ribosomal protein family | ...    81   2e-16

>AT5G24510.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr5:8369295-8369866 REVERSE LENGTH=111
          Length = 111

 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 45/59 (76%)

Query: 1  MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          MS  E AC+YA LIL DD I  TA+NIS L+KTANV VESYW  LFAKL EKKN+ DLI
Sbjct: 1  MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLI 59


>AT1G01100.3 | Symbols:  | 60S acidic ribosomal protein family |
          chr1:50284-50954 REVERSE LENGTH=96
          Length = 96

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 2  SLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          ++GE ACSYA++ILED+ IA TAD I+TL+K A V +ESYW  LFAK+AEK+N+ DLI
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60


>AT1G01100.4 | Symbols:  | 60S acidic ribosomal protein family |
          chr1:50284-50954 REVERSE LENGTH=112
          Length = 112

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 2  SLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          ++GE ACSYA++ILED+ IA TAD I+TL+K A V +ESYW  LFAK+AEK+N+ DLI
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60


>AT1G01100.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr1:50284-50954 REVERSE LENGTH=112
          Length = 112

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 2  SLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          ++GE ACSYA++ILED+ IA TAD I+TL+K A V +ESYW  LFAK+AEK+N+ DLI
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60


>AT1G01100.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr1:50284-50954 REVERSE LENGTH=112
          Length = 112

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 2  SLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          ++GE ACSYA++ILED+ IA TAD I+TL+K A V +ESYW  LFAK+AEK+N+ DLI
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60


>AT5G47700.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr5:19328019-19328724 REVERSE LENGTH=113
          Length = 113

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 2  SLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          ++GE ACSYA++ILED+ IA TAD I+TL+K A V +ESYW  LFAK+AEK+N+ DLI
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60


>AT5G47700.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr5:19328019-19328724 REVERSE LENGTH=113
          Length = 113

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 2  SLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          ++GE ACSYA++ILED+ IA TAD I+TL+K A V +ESYW  LFAK+AEK+N+ DLI
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60


>AT4G00810.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr4:346179-346957 REVERSE LENGTH=113
          Length = 113

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 49/58 (84%)

Query: 2  SLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          ++GE ACSYA++ILED+ IA T+D I+TL+K A V++ESYW  LFAK+AEK+N+ DLI
Sbjct: 3  TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60


>AT4G00810.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr4:346179-346957 REVERSE LENGTH=113
          Length = 113

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 49/58 (84%)

Query: 2  SLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          ++GE ACSYA++ILED+ IA T+D I+TL+K A V++ESYW  LFAK+AEK+N+ DLI
Sbjct: 3  TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60