Miyakogusa Predicted Gene

Lj1g3v5038250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5038250.1 tr|A9SYE0|A9SYE0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_137470,33.33,0.000000000000001,N-terminal domain of the
delta subunit of the F1F0-ATP synthase,F1F0 ATP synthase OSCP/delta
subunit,CUFF.33920.1
         (240 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09650.1 | Symbols: ATPD | ATP synthase delta-subunit gene | ...    82   4e-16
AT4G00895.1 | Symbols:  | ATPase, F1 complex, OSCP/delta subunit...    74   7e-14

>AT4G09650.1 | Symbols: ATPD | ATP synthase delta-subunit gene |
           chr4:6100799-6101503 FORWARD LENGTH=234
          Length = 234

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 85/149 (57%), Gaps = 1/149 (0%)

Query: 93  ATGYAAAVIDVAQSTNSLHSVQRDVQRLLTLLQTVNFESFVADPSRIEEVRRQALKRVLE 152
           A+ YA A+ DVA+  +++     D+++L  +       +F A+P+   E +RQ +  +++
Sbjct: 52  ASSYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVK 111

Query: 153 KGNFHRHVVTILKMLLKKNKLGIVQQVLQEFERIYDELCGTQVVLVSSEKKMGEDELLGI 212
             +   H    L +L+  N++ IV ++++EFE +Y++L  TQ+  V S  K+   +L  I
Sbjct: 112 SSSLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQI 171

Query: 213 VKSVQQMSGAVRVKVKNLVPESL-ASFAV 240
            K VQ+++GA  V+VK ++  SL A F +
Sbjct: 172 AKQVQKLTGAKNVRVKTVIDASLVAGFTI 200


>AT4G00895.1 | Symbols:  | ATPase, F1 complex, OSCP/delta subunit
           protein | chr4:381823-382398 FORWARD LENGTH=191
          Length = 191

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 15/113 (13%)

Query: 89  HRNPATGYAAAVIDVAQSTNSLHSVQRDVQRLLTLLQTVNFESFVADPSRIEEVRRQAL- 147
           H   A+G+AAA++ V QS N L   Q DV+RL+  L               EE +R  + 
Sbjct: 92  HDKAASGFAAALVSVCQSKNCLGRTQEDVRRLMEFLVG-------------EEKKRNKVL 138

Query: 148 -KRVLEKGNFHRHVVTILKMLLKKNKLGIVQQVLQEFERIYDELCGTQVVLVS 199
              V+E+G F +H   ++KML+ + K GI+  VL EFERI +EL   ++V VS
Sbjct: 139 VNDVVERGKFGKHFKGLVKMLIARGKSGILVDVLMEFERICNELVSKKLVWVS 191