Miyakogusa Predicted Gene

Lj1g3v5038210.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5038210.2 tr|H3G9I1|H3G9I1_PHYRM DNA-directed RNA
polymerase subunit OS=Phytophthora ramorum
GN=fgenesh1_pm.C_,46.85,8e-19,RNA polymerase subunit,DNA-directed RNA
polymerase, M/15kDa subunit; C2C2 Zinc finger,Zinc finger,
T,CUFF.33918.2
         (111 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01210.1 | Symbols:  | DNA-directed RNA polymerase, subunit M...   129   4e-31
AT4G07950.1 | Symbols:  | DNA-directed RNA polymerase, subunit M...   127   1e-30

>AT1G01210.1 | Symbols:  | DNA-directed RNA polymerase, subunit M,
           archaeal | chr1:88977-89529 FORWARD LENGTH=106
          Length = 106

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 5/111 (4%)

Query: 1   MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 60
           MEFCP+C N+L++E    G NSR FC TCPYV YI++ V+IK+KQ LV+K I+ V++ DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDD 57

Query: 61  MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 111
           +  A  TE  CP C HDKA +  MQIRSADEP + FY CL  KC   WRE+
Sbjct: 58  IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWREE 106


>AT4G07950.1 | Symbols:  | DNA-directed RNA polymerase, subunit M,
           archaeal | chr4:4798910-4799510 FORWARD LENGTH=106
          Length = 106

 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 5/111 (4%)

Query: 1   MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 60
           MEFCP+C N+L++E    G +SR FC TCPYV  IE+ V+IK+KQ LV+K I+PV++ DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDD 57

Query: 61  MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 111
           +  A  TE  CP C HDKA +  MQIRSADEP + FY CL  KC   WRE+
Sbjct: 58  IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWREE 106