Miyakogusa Predicted Gene

Lj1g3v5036100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5036100.1 tr|B4FKL9|B4FKL9_MAIZE Fiber protein Fb11 OS=Zea
mays PE=4 SV=1,76.19,2e-19, ,CUFF.33915.1
         (63 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46540.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    88   1e-18

>AT2G46540.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: mitochondrion,
          membrane; EXPRESSED IN: 25 plant structures; EXPRESSED
          DURING: 16 growth stages; Has 42 Blast hits to 42
          proteins in 11 species: Archae - 0; Bacteria - 0;
          Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other
          Eukaryotes - 0 (source: NCBI BLink). |
          chr2:19110687-19111681 REVERSE LENGTH=65
          Length = 65

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 49/63 (77%)

Query: 1  MAVMENLKMFVVQQPVVAASCLIAGFGLFLPAFVRPMLDSYQGTKPAPQPALNDVVAGMT 60
          M VME L+MFV Q+PVVAASCLI G GLFLPA VRP+LDS + +K    P L DV+AG+T
Sbjct: 1  MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVT 60

Query: 61 GKK 63
          GKK
Sbjct: 61 GKK 63