Miyakogusa Predicted Gene

Lj1g3v5035060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5035060.1 Non Chatacterized Hit- tr|F6I6F1|F6I6F1_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,70.59,3e-19,no
description,AP2/ERF domain; FAMILY NOT NAMED,NULL; seg,NULL;
AP2_ERF,AP2/ERF domain,NODE_82038_length_701_cov_19.256777.path1.1
         (118 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01250.1 | Symbols:  | Integrase-type DNA-binding superfamily...    82   9e-17
AT5G25810.1 | Symbols: tny | Integrase-type DNA-binding superfam...    49   9e-07
AT5G11590.1 | Symbols: TINY2 | Integrase-type DNA-binding superf...    48   1e-06
AT2G35700.1 | Symbols: ATERF38, ERF38 | ERF family protein 38 | ...    47   2e-06
AT2G25820.1 | Symbols:  | Integrase-type DNA-binding superfamily...    47   2e-06
AT4G25480.1 | Symbols: DREB1A, CBF3, ATCBF3 | dehydration respon...    47   2e-06
AT4G16750.1 | Symbols:  | Integrase-type DNA-binding superfamily...    47   2e-06
AT4G25490.1 | Symbols: CBF1, DREB1B, ATCBF1 | C-repeat/DRE bindi...    47   3e-06
AT3G60490.1 | Symbols:  | Integrase-type DNA-binding superfamily...    47   3e-06
AT2G36450.1 | Symbols: HRD | Integrase-type DNA-binding superfam...    46   4e-06
AT4G25470.1 | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DRE...    45   7e-06

>AT1G01250.1 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr1:104731-105309 REVERSE LENGTH=192
          Length = 192

 Score = 81.6 bits (200), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 1   MAAKAYDVAAYCLKGRKAQLNFPDEVDRLPVPATCTARDIQXXXXXXXXXXXXXXGEKSS 60
           MAAKAYDVAA+CLKGRKAQLNFP+E++ LP P+TCT RDIQ                   
Sbjct: 79  MAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAAAKAANAVKIIKMGDDD 138

Query: 61  IATXXXXXXXXXFWGEIELPELMCCXXXXXXXXXXXXXDTTAWPEVELLPLQPFMACL 118
           +A          FW  IELPELM               D T   + +L   Q FMACL
Sbjct: 139 VAG---IDDGDDFWEGIELPELMMSGGGWSPEPFVAGDDATWLVDGDLYQYQ-FMACL 192


>AT5G25810.1 | Symbols: tny | Integrase-type DNA-binding superfamily
           protein | chr5:8986976-8987632 REVERSE LENGTH=218
          Length = 218

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 28/41 (68%)

Query: 1   MAAKAYDVAAYCLKGRKAQLNFPDEVDRLPVPATCTARDIQ 41
           MAA+A+DVAA  +KG  A LNFPD     P P++ + RDIQ
Sbjct: 70  MAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQ 110


>AT5G11590.1 | Symbols: TINY2 | Integrase-type DNA-binding
           superfamily protein | chr5:3727789-3728499 REVERSE
           LENGTH=236
          Length = 236

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 28/41 (68%)

Query: 1   MAAKAYDVAAYCLKGRKAQLNFPDEVDRLPVPATCTARDIQ 41
           MAA+A+DVAA  +KG  A LNFP+  D  P P + + RDIQ
Sbjct: 85  MAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQ 125


>AT2G35700.1 | Symbols: ATERF38, ERF38 | ERF family protein 38 |
           chr2:15005205-15005789 FORWARD LENGTH=194
          Length = 194

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 28/41 (68%)

Query: 1   MAAKAYDVAAYCLKGRKAQLNFPDEVDRLPVPATCTARDIQ 41
           MAA+A+DVAA  +KG  A LNFP+    LP PA+   +DIQ
Sbjct: 79  MAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQ 119


>AT2G25820.1 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr2:11014986-11015663 FORWARD LENGTH=225
          Length = 225

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 1   MAAKAYDVAAYCLKGRKAQLNFPDEVDRLPVPATCTARDIQ 41
           MAA+A+DVAA  +KG  A LNFP+  D LP P + + +DIQ
Sbjct: 60  MAARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQ 100


>AT4G25480.1 | Symbols: DREB1A, CBF3, ATCBF3 | dehydration response
           element B1A | chr4:13018353-13019003 REVERSE LENGTH=216
          Length = 216

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 1   MAAKAYDVAAYCLKGRKAQLNFPDEVDRLPVPATCTARDIQ 41
           MAA+A+DVAA  L+GR A LNF D   RL +P +  A+DIQ
Sbjct: 85  MAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQ 125


>AT4G16750.1 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr4:9421121-9421660 REVERSE LENGTH=179
          Length = 179

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 28/41 (68%)

Query: 1   MAAKAYDVAAYCLKGRKAQLNFPDEVDRLPVPATCTARDIQ 41
           MAA+A+DVAA  +KG  A LNFP+    LP PA+   +DIQ
Sbjct: 74  MAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQ 114


>AT4G25490.1 | Symbols: CBF1, DREB1B, ATCBF1 | C-repeat/DRE binding
           factor 1 | chr4:13021921-13022562 REVERSE LENGTH=213
          Length = 213

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 1   MAAKAYDVAAYCLKGRKAQLNFPDEVDRLPVPATCTARDIQ 41
           MAA+A+DVAA  L+GR A LNF D   RL +P +  A+DIQ
Sbjct: 82  MAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQ 122


>AT3G60490.1 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr3:22349527-22350297 FORWARD LENGTH=256
          Length = 256

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 28/41 (68%)

Query: 1   MAAKAYDVAAYCLKGRKAQLNFPDEVDRLPVPATCTARDIQ 41
           MAA+A+DVAA  +KG    LNFP+    LP P +C+ +DIQ
Sbjct: 105 MAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQ 145


>AT2G36450.1 | Symbols: HRD | Integrase-type DNA-binding
          superfamily protein | chr2:15294303-15294857 REVERSE
          LENGTH=184
          Length = 184

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 26/36 (72%)

Query: 1  MAAKAYDVAAYCLKGRKAQLNFPDEVDRLPVPATCT 36
          MAA AYDVAA  LKG +A+LNFP+ V  LP P + +
Sbjct: 50 MAAIAYDVAALALKGSQAELNFPNSVSSLPAPTSMS 85


>AT4G25470.1 | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DRE
           binding factor 2 | chr4:13015436-13016086 REVERSE
           LENGTH=216
          Length = 216

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 1   MAAKAYDVAAYCLKGRKAQLNFPDEVDRLPVPATCTARDIQ 41
           MAA+A+DVAA  L+GR A LNF D   RL +P +  A++IQ
Sbjct: 85  MAARAHDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQ 125