Miyakogusa Predicted Gene

Lj1g3v5021030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5021030.1 Non Chatacterized Hit- tr|D7LXT8|D7LXT8_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,36.65,7e-18,seg,NULL,CUFF.33847.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18310.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    80   6e-16
AT5G18310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    73   7e-14

>AT5G18310.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 60 Blast hits to 60 proteins in 14
           species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi -
           0; Plants - 53; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr5:6061759-6062912 FORWARD
           LENGTH=167
          Length = 167

 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 2   DDYCKRSGQIPAFGNWDYSNEMPITQYFESARQAGLVNRYSSSSGESDPCNNVRVDHDLY 61
           D Y K+SGQIP FG W+ +NEMPITQYFE+ RQAGL+    +++  +             
Sbjct: 7   DTYKKKSGQIPRFGEWEEANEMPITQYFENPRQAGLIRHQYTTTSSASSTTTSSSSSSSS 66

Query: 62  SVDFKKKPLRNMPPSTL---RKGMRNRERRYPVKEGMNMRKQQGKVWDVTEHPRKHHDGV 118
           S +  K    +  P  L   R+    +E+R P +   ++  Q  K +      ++  + V
Sbjct: 67  SAEALKLASHHPRPRHLHAQRQTAGTKEKRGPQRRVRDVSAQSDKYYIDVNGVKQFKNDV 126

Query: 119 XXXXXXXXXXXVDEDLYKIPPELLRRTKRKKMLGFISKCLVPAA 162
                      VDEDLYKIPPE +  + RK+   F++ CLVP A
Sbjct: 127 --ALTCKPPKPVDEDLYKIPPEFIHSSTRKRRPSFLA-CLVPCA 167


>AT5G18310.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT5G48500.1); Has 30201 Blast
           hits to 17322 proteins in 780 species: Archae - 12;
           Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
           5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:6061759-6062912 FORWARD LENGTH=139
          Length = 139

 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 28/161 (17%)

Query: 2   DDYCKRSGQIPAFGNWDYSNEMPITQYFESARQAGLVNRYSSSSGESDPCNNVRVDHDLY 61
           D Y K+SGQIP FG W+ +NEMPITQYFE+ RQA  +   S         ++ R  H L+
Sbjct: 7   DTYKKKSGQIPRFGEWEEANEMPITQYFENPRQAEALKLAS---------HHPRPRH-LH 56

Query: 62  SVDFKKKPLRNMPPSTLRKGMRNRERRYPVKEGMNMRKQQGKVWDVTEHPRKHHDGVXXX 121
           +                R+    +E+R P +   ++  Q  K +      ++  + V   
Sbjct: 57  A---------------QRQTAGTKEKRGPQRRVRDVSAQSDKYYIDVNGVKQFKNDV--A 99

Query: 122 XXXXXXXXVDEDLYKIPPELLRRTKRKKMLGFISKCLVPAA 162
                   VDEDLYKIPPE +  + RK+   F++ CLVP A
Sbjct: 100 LTCKPPKPVDEDLYKIPPEFIHSSTRKRRPSFLA-CLVPCA 139