Miyakogusa Predicted Gene

Lj1g3v5020940.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5020940.2 Non Chatacterized Hit- tr|I1MIM1|I1MIM1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.46928
PE,85.73,0,RB_A,Retinoblastoma-associated protein, A-box;
RB_B,Retinoblastoma-associated protein, B-box; DUF345,CUFF.33841.2
         (901 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12280.2 | Symbols: RBR1 | retinoblastoma-related 1 | chr3:39...  1214   0.0  
AT3G12280.1 | Symbols: RBR1, RBR, RB, ATRBR1, RB1 | retinoblasto...  1214   0.0  

>AT3G12280.2 | Symbols: RBR1 | retinoblastoma-related 1 |
           chr3:3913671-3918433 REVERSE LENGTH=1012
          Length = 1012

 Score = 1214 bits (3141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/895 (67%), Positives = 696/895 (77%), Gaps = 18/895 (2%)

Query: 9   MELVNPPVAP--VDNGDQADSRFADFCKNGLALDEKSCKEAINLFGETEHILLTYVSSMG 66
           ME V PPV P    NG ++++   D C+  L+LD  +C EA+ LF ET+ IL   +S++G
Sbjct: 1   MEEVQPPVTPPIEPNGKRSEASLLDICEKVLSLDGSTCDEALKLFTETKRILSASMSNIG 60

Query: 67  NGMSEDAERYWFAFILYSVKRXXXXXXXXXXXXXXXXXXXFCRILRAAKLSIADFFKELP 126
           +G  E+ ER+WFAFILYSVKR                    C+ILRA KL+I DFFKELP
Sbjct: 61  SGTREEVERFWFAFILYSVKRLSVRKEADGLSVSGDNEFNLCQILRALKLNIVDFFKELP 120

Query: 127 QFVVKAGPILSNLYGKDWENRLQAKEMHANAIHLTILSKYYKRIFAEFFVASDANIEKNS 186
           QFVVKAG +L  LYG DWENRLQAKE+ AN +HL++LSKYYKR F EFF+  DAN EKNS
Sbjct: 121 QFVVKAGSVLGELYGADWENRLQAKEVQANFVHLSLLSKYYKRGFREFFLTYDANAEKNS 180

Query: 187 S-VTVHASDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNIS 245
           +  + +  D +RFGWLLFLALR HAFSRFKDLVTC+NG++SILAILIIHVP RFRNF+I 
Sbjct: 181 ANSSTYLLDSYRFGWLLFLALRNHAFSRFKDLVTCSNGVVSILAILIIHVPCRFRNFSIQ 240

Query: 246 DSSRFVKKSSKGVDLLASLCNIYNTSEDEMRKTMVKANTLIADILKKKPCLASECQTDNL 305
           DSSRFVKK  KGVDL+ASLC IY+ SEDE+R  + KAN L+  ILKKKP  ASECQTD L
Sbjct: 241 DSSRFVKKGDKGVDLVASLCKIYDASEDELRIVIDKANNLVETILKKKPSPASECQTDKL 300

Query: 306 ENFDRDSLTYFKDLMEESSLPSSLNILEKDYDDMIRNKGELDERLFINEDDXXXXXXXXX 365
           +N D D LTYF+DL+EE+S+ +SL  LEKDY D    KGELDER+FINE+D         
Sbjct: 301 DNIDPDGLTYFEDLLEETSISTSLITLEKDYYD---GKGELDERVFINEEDSLLGSGSLS 357

Query: 366 XXXXXXXXXKRKFDSIASPAKAVISPLSPHRSPASHANGVTGSTNSKMAAATPVSTAMTT 425
                    KRK D+++SPA+  ISPLSPH+SPA+  NG++G+T     AATPVSTAMTT
Sbjct: 358 AGAVNITGVKRKIDALSSPARTFISPLSPHKSPAAKTNGISGATK---LAATPVSTAMTT 414

Query: 426 AKWLRTVVCPLASKPSQELERFLTSCDKDITNDVVCRALIILQTIFPSSPLGERCVTGSL 485
           AKWLRTV+ PL  KPS  LE FL SCD+DITNDV  RA IIL+ IFP+S LG +C  GSL
Sbjct: 415 AKWLRTVISPLLPKPSPGLEHFLKSCDRDITNDVTRRAHIILEAIFPNSSLGAQCGGGSL 474

Query: 486 QSANIMDNIWAEQRRLEALKFYYRVLEAMCRAEAQTLHATNLTSLLTNERFHRCMLACSA 545
           Q+ ++MD+IWAEQRRLEA K YYRVLEAMC+AEAQ LHA NL SLLTNERFHRCMLACSA
Sbjct: 475 QAVDLMDDIWAEQRRLEACKLYYRVLEAMCKAEAQILHANNLNSLLTNERFHRCMLACSA 534

Query: 546 ELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLES 605
           ELVLATHKT+TMLFPAVLERTGITAFDLSKVIESFIRHE+SLPRELRRHLNSLEERLLES
Sbjct: 535 ELVLATHKTITMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLES 594

Query: 606 MVWQKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMQINFSYGGLPPVPSLPKL 665
           MVW+KGSSMYNSL VARP+L+ EIN+LGLLAEPMPSLD IA  INFS G      S+ K 
Sbjct: 595 MVWEKGSSMYNSLIVARPSLALEINQLGLLAEPMPSLDAIAALINFSDGA-NHASSVQKH 653

Query: 666 ETSPIQIGDTRSPKRLCTEHRNVFVERNSFASPVKDRLLPFSNPMSKLPPPPLQSAFASP 725
           ET P Q G  RSPKRLCT++R++ VERNSF SPVKDRLL   N  SK+ PPPLQSAFASP
Sbjct: 654 ETCPGQNGGIRSPKRLCTDYRSILVERNSFTSPVKDRLLALGNVKSKMLPPPLQSAFASP 713

Query: 726 TKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQR 785
           T+PNPGGGGETCAETGINIFF KI KL AVRI+GMVERLQLSQQIRE+VYC FQ +L QR
Sbjct: 714 TRPNPGGGGETCAETGINIFFTKINKLAAVRINGMVERLQLSQQIRESVYCFFQHVLAQR 773

Query: 786 TSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIQGYRKQPHCKHQVFRSVFVDWSSARR 845
           TSL F+RHIDQIILCCFYGVAKISQ+SLTFREII  YRKQP CK  VFRSV+VD    RR
Sbjct: 774 TSLLFSRHIDQIILCCFYGVAKISQMSLTFREIIYNYRKQPQCKPLVFRSVYVDALQCRR 833

Query: 846 NGASKQRTGQDHVDIITFYNQIFIPSVKPLLVELGPGGATMKSDQMHEVNNKNDG 900
            G    R G DHVDIITFYN+IFIP+VKPLLVELGP    +++D+  E NNK +G
Sbjct: 834 QG----RIGPDHVDIITFYNEIFIPAVKPLLVELGP----VRNDRAVEANNKPEG 880


>AT3G12280.1 | Symbols: RBR1, RBR, RB, ATRBR1, RB1 |
           retinoblastoma-related 1 | chr3:3913671-3918433 REVERSE
           LENGTH=1013
          Length = 1013

 Score = 1214 bits (3141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/895 (67%), Positives = 696/895 (77%), Gaps = 18/895 (2%)

Query: 9   MELVNPPVAP--VDNGDQADSRFADFCKNGLALDEKSCKEAINLFGETEHILLTYVSSMG 66
           ME V PPV P    NG ++++   D C+  L+LD  +C EA+ LF ET+ IL   +S++G
Sbjct: 1   MEEVQPPVTPPIEPNGKRSEASLLDICEKVLSLDGSTCDEALKLFTETKRILSASMSNIG 60

Query: 67  NGMSEDAERYWFAFILYSVKRXXXXXXXXXXXXXXXXXXXFCRILRAAKLSIADFFKELP 126
           +G  E+ ER+WFAFILYSVKR                    C+ILRA KL+I DFFKELP
Sbjct: 61  SGTREEVERFWFAFILYSVKRLSVRKEADGLSVSGDNEFNLCQILRALKLNIVDFFKELP 120

Query: 127 QFVVKAGPILSNLYGKDWENRLQAKEMHANAIHLTILSKYYKRIFAEFFVASDANIEKNS 186
           QFVVKAG +L  LYG DWENRLQAKE+ AN +HL++LSKYYKR F EFF+  DAN EKNS
Sbjct: 121 QFVVKAGSVLGELYGADWENRLQAKEVQANFVHLSLLSKYYKRGFREFFLTYDANAEKNS 180

Query: 187 S-VTVHASDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNIS 245
           +  + +  D +RFGWLLFLALR HAFSRFKDLVTC+NG++SILAILIIHVP RFRNF+I 
Sbjct: 181 ANSSTYLLDSYRFGWLLFLALRNHAFSRFKDLVTCSNGVVSILAILIIHVPCRFRNFSIQ 240

Query: 246 DSSRFVKKSSKGVDLLASLCNIYNTSEDEMRKTMVKANTLIADILKKKPCLASECQTDNL 305
           DSSRFVKK  KGVDL+ASLC IY+ SEDE+R  + KAN L+  ILKKKP  ASECQTD L
Sbjct: 241 DSSRFVKKGDKGVDLVASLCKIYDASEDELRIVIDKANNLVETILKKKPSPASECQTDKL 300

Query: 306 ENFDRDSLTYFKDLMEESSLPSSLNILEKDYDDMIRNKGELDERLFINEDDXXXXXXXXX 365
           +N D D LTYF+DL+EE+S+ +SL  LEKDY D    KGELDER+FINE+D         
Sbjct: 301 DNIDPDGLTYFEDLLEETSISTSLITLEKDYYD---GKGELDERVFINEEDSLLGSGSLS 357

Query: 366 XXXXXXXXXKRKFDSIASPAKAVISPLSPHRSPASHANGVTGSTNSKMAAATPVSTAMTT 425
                    KRK D+++SPA+  ISPLSPH+SPA+  NG++G+T     AATPVSTAMTT
Sbjct: 358 AGAVNITGVKRKIDALSSPARTFISPLSPHKSPAAKTNGISGATK---LAATPVSTAMTT 414

Query: 426 AKWLRTVVCPLASKPSQELERFLTSCDKDITNDVVCRALIILQTIFPSSPLGERCVTGSL 485
           AKWLRTV+ PL  KPS  LE FL SCD+DITNDV  RA IIL+ IFP+S LG +C  GSL
Sbjct: 415 AKWLRTVISPLLPKPSPGLEHFLKSCDRDITNDVTRRAHIILEAIFPNSSLGAQCGGGSL 474

Query: 486 QSANIMDNIWAEQRRLEALKFYYRVLEAMCRAEAQTLHATNLTSLLTNERFHRCMLACSA 545
           Q+ ++MD+IWAEQRRLEA K YYRVLEAMC+AEAQ LHA NL SLLTNERFHRCMLACSA
Sbjct: 475 QAVDLMDDIWAEQRRLEACKLYYRVLEAMCKAEAQILHANNLNSLLTNERFHRCMLACSA 534

Query: 546 ELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLES 605
           ELVLATHKT+TMLFPAVLERTGITAFDLSKVIESFIRHE+SLPRELRRHLNSLEERLLES
Sbjct: 535 ELVLATHKTITMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLES 594

Query: 606 MVWQKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMQINFSYGGLPPVPSLPKL 665
           MVW+KGSSMYNSL VARP+L+ EIN+LGLLAEPMPSLD IA  INFS G      S+ K 
Sbjct: 595 MVWEKGSSMYNSLIVARPSLALEINQLGLLAEPMPSLDAIAALINFSDGA-NHASSVQKH 653

Query: 666 ETSPIQIGDTRSPKRLCTEHRNVFVERNSFASPVKDRLLPFSNPMSKLPPPPLQSAFASP 725
           ET P Q G  RSPKRLCT++R++ VERNSF SPVKDRLL   N  SK+ PPPLQSAFASP
Sbjct: 654 ETCPGQNGGIRSPKRLCTDYRSILVERNSFTSPVKDRLLALGNVKSKMLPPPLQSAFASP 713

Query: 726 TKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQR 785
           T+PNPGGGGETCAETGINIFF KI KL AVRI+GMVERLQLSQQIRE+VYC FQ +L QR
Sbjct: 714 TRPNPGGGGETCAETGINIFFTKINKLAAVRINGMVERLQLSQQIRESVYCFFQHVLAQR 773

Query: 786 TSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIQGYRKQPHCKHQVFRSVFVDWSSARR 845
           TSL F+RHIDQIILCCFYGVAKISQ+SLTFREII  YRKQP CK  VFRSV+VD    RR
Sbjct: 774 TSLLFSRHIDQIILCCFYGVAKISQMSLTFREIIYNYRKQPQCKPLVFRSVYVDALQCRR 833

Query: 846 NGASKQRTGQDHVDIITFYNQIFIPSVKPLLVELGPGGATMKSDQMHEVNNKNDG 900
            G    R G DHVDIITFYN+IFIP+VKPLLVELGP    +++D+  E NNK +G
Sbjct: 834 QG----RIGPDHVDIITFYNEIFIPAVKPLLVELGP----VRNDRAVEANNKPEG 880