Miyakogusa Predicted Gene

Lj1g3v5020820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5020820.1 tr|C1FHQ2|C1FHQ2_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_62160
,31.11,5e-18,FAMILY NOT NAMED,NULL; Whirly,Plant transcription factor;
no description,ssDNA-binding transcription,CUFF.33827.1
         (235 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71260.1 | Symbols: ATWHY2, WHY2 | WHIRLY 2 | chr1:26861849-2...   264   5e-71
AT2G02740.2 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding tran...   172   1e-43
AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding trans...   171   4e-43
AT2G02740.1 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding tran...   170   9e-43

>AT1G71260.1 | Symbols: ATWHY2, WHY2 | WHIRLY 2 |
           chr1:26861849-26863391 REVERSE LENGTH=238
          Length = 238

 Score =  264 bits (674), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 126/213 (59%), Positives = 162/213 (76%), Gaps = 7/213 (3%)

Query: 30  VRDFSTAARETYVAKGYT-------TDRVFAPYYVYKGKAAMSLSPVLPTFTKLDSGALV 82
           +R F++ +  +   +G+        + R+FAPY ++KGKAA+S+ PVLP+FT++DSG L 
Sbjct: 26  LRGFASWSNSSTPGRGFPGKDAAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLR 85

Query: 83  VERRGSIMMVFTPAIGERKYDWEKRQKFALSATEVGSLIAMGPQDSCEFFHDPSMSSSNA 142
           ++RRGS+MM F PAIGERKYDWEK+QKFALS TEVGSLI+MG +DS EFFHDPSM SSNA
Sbjct: 86  IDRRGSLMMTFMPAIGERKYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNA 145

Query: 143 GQVRKSLSIKPHANSSGYFVSLTVVNNLLNAKENFNVPVTTAEFAVMKTACSFALPHIMG 202
           GQVRKSLS+KPHA+ SGYF+SL+V N++L   + F VPVT AEFAVMKTA SFALPHIMG
Sbjct: 146 GQVRKSLSVKPHADGSGYFISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMG 205

Query: 203 WDRLTNQQSSLPGGTVGLQSKVDKPVFDLEWDK 235
           W+RLT   ++    +  +     +P  +LEWDK
Sbjct: 206 WNRLTGHVNTEALPSRNVSHLKTEPQLELEWDK 238


>AT2G02740.2 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding
           transcriptional regulator | chr2:769389-770993 FORWARD
           LENGTH=267
          Length = 267

 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/189 (41%), Positives = 122/189 (64%), Gaps = 2/189 (1%)

Query: 47  TTDRVFAPYYVYKGKAAMSLSPVLPTFTKLDSGALVVERRGSIMMVFTPAIGERKYDWEK 106
           ++ R +  + +YKGKAA+++ P  P F  L+SGA  + + G +++ F PA G R+YDW +
Sbjct: 81  SSPRFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSR 140

Query: 107 RQKFALSATEVGSLIAMGPQDSCEFFHDPSMSSSNAGQVRKSLSIKPHANSSGYFVSLTV 166
           +Q F+LS TE+G+L+++GP++SCEFFHDP     + G+VRK L ++P  + SG F +L+V
Sbjct: 141 KQVFSLSVTEIGNLVSLGPRESCEFFHDPFKGKGDEGKVRKVLKVEPLPDGSGRFFNLSV 200

Query: 167 VNNLLNAKENFNVPVTTAEFAVMKTACSFALPHIMGWDRLTNQQSSLPGGTVGLQSKVDK 226
            N LLN  E+  +P+T AEFAV+ +A +F LPH++GW    N  S  P  +  L +   K
Sbjct: 201 QNKLLNVDESVYIPITKAEFAVLISAFNFVLPHLIGWSAFAN--SIKPEDSNRLNNASPK 258

Query: 227 PVFDLEWDK 235
              D EW +
Sbjct: 259 YGGDYEWSR 267


>AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding
           transcriptional regulator | chr1:4929352-4930810 REVERSE
           LENGTH=263
          Length = 263

 Score =  171 bits (433), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 122/186 (65%), Gaps = 2/186 (1%)

Query: 50  RVFAPYYVYKGKAAMSLSPVLPTFTKLDSGALVVERRGSIMMVFTPAIGERKYDWEKRQK 109
           R +  + +YKGKAA+++ P  P F  LDSGA  + + G +++ F P+ G R+YDW K+Q 
Sbjct: 80  RFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQV 139

Query: 110 FALSATEVGSLIAMGPQDSCEFFHDPSMSSSNAGQVRKSLSIKPHANSSGYFVSLTVVNN 169
           F+LS TE+G+L+++GP++SCEFFHDP    S+ G+VRK L ++P  + SG+F +L+V N 
Sbjct: 140 FSLSVTEIGTLVSLGPRESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNK 199

Query: 170 LLNAKENFNVPVTTAEFAVMKTACSFALPHIMGWDRLTNQQSSLPGGTVGLQSKVDKPVF 229
           L+N  E+  +P+T AEFAV+ +A +F LP+++GW    N  S  P  T  + +       
Sbjct: 200 LVNVDESIYIPITRAEFAVLISAFNFVLPYLIGWHAFAN--SIKPEETSRVNNASPNYGG 257

Query: 230 DLEWDK 235
           D EW++
Sbjct: 258 DYEWNR 263


>AT2G02740.1 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding
           transcriptional regulator | chr2:769389-770993 FORWARD
           LENGTH=268
          Length = 268

 Score =  170 bits (430), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 123/190 (64%), Gaps = 3/190 (1%)

Query: 47  TTDRVFAPYYVYKGKAAMSLSPVLPTFTKLDSGALVVERRGSIMMVFTPAIGERKYDWEK 106
           ++ R +  + +YKGKAA+++ P  P F  L+SGA  + + G +++ F PA G R+YDW +
Sbjct: 81  SSPRFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSR 140

Query: 107 RQKFALSATEVGSLIAMGPQDSCEFFHDP-SMSSSNAGQVRKSLSIKPHANSSGYFVSLT 165
           +Q F+LS TE+G+L+++GP++SCEFFHDP     S+ G+VRK L ++P  + SG F +L+
Sbjct: 141 KQVFSLSVTEIGNLVSLGPRESCEFFHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLS 200

Query: 166 VVNNLLNAKENFNVPVTTAEFAVMKTACSFALPHIMGWDRLTNQQSSLPGGTVGLQSKVD 225
           V N LLN  E+  +P+T AEFAV+ +A +F LPH++GW    N  S  P  +  L +   
Sbjct: 201 VQNKLLNVDESVYIPITKAEFAVLISAFNFVLPHLIGWSAFAN--SIKPEDSNRLNNASP 258

Query: 226 KPVFDLEWDK 235
           K   D EW +
Sbjct: 259 KYGGDYEWSR 268