Miyakogusa Predicted Gene

Lj1g3v5000610.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5000610.1 Non Chatacterized Hit- tr|F1MVW4|F1MVW4_BOVIN
Uncharacterized protein (Fragment) OS=Bos taurus GN=XP,24.07,4e-18,GB
DEF: T27C4.14 PROTEIN,NULL; EXPORTIN 4,7-RELATED,NULL; seg,NULL; ARM
repeat,Armadillo-type fold,CUFF.33817.1
         (600 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04490.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   741   0.0  
AT4G38092.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   109   4e-24

>AT3G04490.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G38092.1); Has 75 Blast hits to 64 proteins in
           20 species: Archae - 0; Bacteria - 0; Metazoa - 36;
           Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes -
           17 (source: NCBI BLink). | chr3:1200816-1209713 FORWARD
           LENGTH=1118
          Length = 1118

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/587 (64%), Positives = 457/587 (77%), Gaps = 3/587 (0%)

Query: 13  SDLHSTMRSFELACSSVQIPINPGATEAIILSLGQSSQPYKTCQFILENSLVATARFHXX 72
           + L STMR+ ELACS +QI  NP A EA ILSL QS QPYK C++ILENS VA ARF   
Sbjct: 19  AQLQSTMRAIELACSYIQINSNPVAAEATILSLHQSPQPYKACRYILENSQVANARFQAA 78

Query: 73  XXXXXXXXXXWGFLNTDDKRGLISFCLCYAMQHASSPDGYVQAKVSSVAAQLMKRAWLEF 132
                     W FL TDDK GLISFCL Y MQHA+S +GYV +KVSSVAAQLMKR WLEF
Sbjct: 79  AAIRESAIREWSFLATDDKGGLISFCLGYVMQHANSSEGYVLSKVSSVAAQLMKRGWLEF 138

Query: 133 AAAEKETLFYQVNQAIVGIHGLDVQFAGIKFLESLVSEFSPSTSSAMGLPREFHEQCRTS 192
             A+KE  FYQ+NQAI+G HGLDVQF G+ FLESLVSEFSPSTSSAMGLPREFHE CR S
Sbjct: 139 TPAQKEVFFYQINQAILGSHGLDVQFIGVNFLESLVSEFSPSTSSAMGLPREFHENCRKS 198

Query: 193 FEKDYLKTFYRWTQEAASSVTSRIIESDSVVPEVKVCTTALDLMLQILNWDFRCNTSDTK 252
            E+++LK+FY+W Q+AA SVTS+IIES S VPEVKVC   L LM QILNW+F  +   T+
Sbjct: 199 LEQNFLKSFYQWAQDAALSVTSKIIESHSSVPEVKVCNATLRLMHQILNWEFPYSKGGTR 258

Query: 253 INVNIFSSGVRQDGDTPKRSECHLVQPGSDWRDVLILSGHVGWLLSLYAALRQKFSREGY 312
            ++N+FS G+R D    +++EC +VQPG+ W DVL+ S HVGWL++ Y+++RQKF  EGY
Sbjct: 259 ASINVFSDGIRPDNALSRKTECVIVQPGASWCDVLLSSSHVGWLINFYSSVRQKFDLEGY 318

Query: 313 WLDCPIAVSARKLIVQFCSLTGTVFLSDDKKMHEHHLLQLLSGIIAWVDPPEAVSKAIEC 372
           WLDCP+AVSARKLIVQ CSL G +F S++ +M + HLL LL+G++ W+DPP+ +SK IE 
Sbjct: 319 WLDCPVAVSARKLIVQLCSLAGEIFPSNNVQMRDQHLLLLLTGVLPWIDPPDVISKEIEE 378

Query: 373 GRSESEMLDGCRALLALANVTNPCVFDDLLKSMRPIGTLTFLSMLMSEVIKVLMTNNTEE 432
           GRS SEM+DGCRALL++  VT P VFD LL+S+RP GTLT LSMLM EV+KVLM N+T+E
Sbjct: 379 GRSGSEMIDGCRALLSIGTVTTPVVFDQLLRSLRPFGTLTLLSMLMGEVVKVLMANSTDE 438

Query: 433 ESWSYEARDVLLDTWTALLMPINTITVNALLPSEGIQAAANLFGFIVECELRMASASAFN 492
           E+WSYEARD+LLDTWT LL  ++    NA LP EGI AAA+LF  IVE EL++ASASA  
Sbjct: 439 ETWSYEARDILLDTWTTLLTSMDGSGGNAWLPPEGIHAAASLFSLIVESELKVASASATT 498

Query: 493 DGGDSDYLHGSVSAMDERLSSYALIARAAIDVTIPLLMRVFSERVARLNQGRGIMDLTET 552
           +  D+D L  SVSAMDERL SYALIARAA+D TIP L ++FS+ VARL+QGRG +D TET
Sbjct: 499 E-DDADCL-ASVSAMDERLGSYALIARAAVDATIPFLAKLFSDHVARLHQGRGTVDPTET 556

Query: 553 MEELYSLLLIIGHVIADEGEGETPLVPNAIQTQVVVDSVEEDKHPVI 599
           +EE+YSLLLIIGHV+ADEGEGET LVP+A+Q+   VD VE + HPV+
Sbjct: 557 LEEVYSLLLIIGHVLADEGEGETALVPDALQSH-FVDVVEANNHPVV 602


>AT4G38092.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT3G04490.1); Has 30201 Blast hits
           to 17322 proteins in 780 species: Archae - 12; Bacteria
           - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:17885340-17886688 FORWARD LENGTH=130
          Length = 130

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 70/103 (67%)

Query: 22  FELACSSVQIPINPGATEAIILSLGQSSQPYKTCQFILENSLVATARFHXXXXXXXXXXX 81
            +++ S VQI  NP A EA ILSL QS QPYK C++ILENS VA ARF            
Sbjct: 27  LDISLSFVQINSNPVAAEATILSLHQSPQPYKACRYILENSQVANARFQAAAAIRKSAIR 86

Query: 82  XWGFLNTDDKRGLISFCLCYAMQHASSPDGYVQAKVSSVAAQL 124
            W FL TDDK GLISFCL Y MQHA+S +GYV +KVSSVAAQL
Sbjct: 87  EWSFLATDDKGGLISFCLGYVMQHANSSEGYVLSKVSSVAAQL 129