Miyakogusa Predicted Gene

Lj1g3v4999570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4999570.1 CUFF.33805.1
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19260.1 | Symbols:  | TTF-type zinc finger protein with HAT ...   110   9e-25
AT4G09660.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Zinc finge...   103   8e-23
AT2G06541.1 | Symbols:  | TTF-type zinc finger protein with HAT ...    76   2e-14
AT2G06541.2 | Symbols:  | TTF-type zinc finger protein with HAT ...    75   2e-14

>AT1G19260.1 | Symbols:  | TTF-type zinc finger protein with HAT
           dimerisation domain | chr1:6657260-6659569 REVERSE
           LENGTH=769
          Length = 769

 Score =  110 bits (274), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 77/146 (52%), Gaps = 5/146 (3%)

Query: 58  EIERDPGKRPPIWQYPPDQVDEIRRAYLKCGPYQNFLEHYPFSGKDDRQRRFQYTWFCLF 117
           E+  DP KR  I  Y P+Q DE+RR YL  GP Q     +         RRF   WF L+
Sbjct: 19  ELPSDPAKRKSILSYHPNQRDEVRREYLIRGPCQPRGHKFKQIAIGKVLRRFNPKWFDLY 78

Query: 118 PSWLEYSPSKDAAYCLPCYLFSKKPSGRPGSDVFIATGFRNWKKVRNGKKCAFLTHTGKD 177
             WLEYS  K+ A+CL CYLF  +   + GSD F++TGF +W K     +     H G D
Sbjct: 79  GDWLEYSVEKEKAFCLYCYLFRDQTGNQGGSDSFLSTGFCSWNKADRLDQ-----HVGLD 133

Query: 178 PCSSHNNALKACQDLLNQNGHIRNVF 203
             S HNNA + C+DL+ Q   I++  
Sbjct: 134 VNSFHNNAKRKCEDLMRQGQSIKHAL 159


>AT4G09660.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Zinc finger,
           TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana
           protein match is: TTF-type zinc finger protein with HAT
           dimerisation domain (TAIR:AT1G19260.1); Has 839 Blast
           hits to 796 proteins in 42 species: Archae - 0; Bacteria
           - 0; Metazoa - 438; Fungi - 0; Plants - 401; Viruses -
           0; Other Eukaryotes - 0 (source: NCBI BLink). |
           chr4:6104446-6106607 FORWARD LENGTH=664
          Length = 664

 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 62  DPGKRPPIWQYPPDQVDEIRRAYLKCGPYQNFLEHYPFSGKDDRQRRFQYTWFCLFPSWL 121
           DP KR  I  Y  +Q DE+RR YL  GP Q     +         RRF   WF L+  WL
Sbjct: 23  DPAKRKSILSYHLNQRDEVRREYLIRGPCQPRGHKFKQIVIGKVLRRFNPKWFDLYGDWL 82

Query: 122 EYSPSKDAAYCLPCYLFSKKPSGRPGSDVFIATGFRNWKKVRNGKKCAFLTHTGKDPCSS 181
           EYS  K+ A+CL CYLF  +   + GSD F++TGF +W K     +     H G D  S 
Sbjct: 83  EYSVEKEKAFCLYCYLFRDQAGNQGGSDSFLSTGFCSWNKADRLDQ-----HVGLDVNSF 137

Query: 182 HNNALKACQDLLNQNGHIR 200
           HNNA + C+DL+ Q    R
Sbjct: 138 HNNAKRKCEDLMRQGLSFR 156


>AT2G06541.1 | Symbols:  | TTF-type zinc finger protein with HAT
           dimerisation domain | chr2:2598222-2600326 REVERSE
           LENGTH=592
          Length = 592

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 106 QRRFQYTWFCLFPSWLEYSPSKDAAYCLPCYLFSKKPSGRPGSDVFIATGFRNWKKVRNG 165
            RRF   WF L+  WLEYS  KD AYCL CYLF      + GSD F   GF  WK  ++ 
Sbjct: 1   MRRFNPDWFDLYSGWLEYSVKKDKAYCLGCYLFRDYLENKSGSDTFATKGFDTWKNPQSL 60

Query: 166 KKCAFLTHTGKDPCSSHNNALKACQDLLNQNGHIRNVF 203
           ++     H G    S HNNALK    L+ Q   I + F
Sbjct: 61  RE-----HVGL-VNSFHNNALKRADCLMRQGQSIVHAF 92


>AT2G06541.2 | Symbols:  | TTF-type zinc finger protein with HAT
           dimerisation domain | chr2:2598222-2600326 REVERSE
           LENGTH=564
          Length = 564

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 106 QRRFQYTWFCLFPSWLEYSPSKDAAYCLPCYLFSKKPSGRPGSDVFIATGFRNWKKVRNG 165
            RRF   WF L+  WLEYS  KD AYCL CYLF      + GSD F   GF  WK  ++ 
Sbjct: 1   MRRFNPDWFDLYSGWLEYSVKKDKAYCLGCYLFRDYLENKSGSDTFATKGFDTWKNPQSL 60

Query: 166 KKCAFLTHTGKDPCSSHNNALKACQDLLNQNGHIRNVF 203
           ++     H G    S HNNALK    L+ Q   I + F
Sbjct: 61  RE-----HVGL-VNSFHNNALKRADCLMRQGQSIVHAF 92