Miyakogusa Predicted Gene

Lj1g3v4998490.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4998490.1 Non Chatacterized Hit- tr|I1JRR9|I1JRR9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15277
PE,83.07,0,SUBFAMILY NOT NAMED,NULL; PEROXISOME ASSEMBLY PROTEIN 12
(PEROXIN-12),Peroxisome assembly protein 12,CUFF.33797.1
         (379 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04460.1 | Symbols: PEX12, ATPEX12, APM4 | peroxin-12 | chr3:...   556   e-159

>AT3G04460.1 | Symbols: PEX12, ATPEX12, APM4 | peroxin-12 |
           chr3:1186641-1189094 FORWARD LENGTH=393
          Length = 393

 Score =  556 bits (1433), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 264/389 (67%), Positives = 320/389 (82%), Gaps = 14/389 (3%)

Query: 1   MLFQVGGQGSRPTFFEMAAAEQLPASLRAALTYSIGVLALRRPFLHRFLDYEDESFAFLM 60
           MLFQVGG+G+RPTFFEMAAA+QLPASLRAALTYS+GV ALRR FLH+ LDYEDE FA LM
Sbjct: 1   MLFQVGGEGTRPTFFEMAAAQQLPASLRAALTYSLGVFALRRSFLHKILDYEDEFFAALM 60

Query: 61  LLLESHSLRTTDASFSESLYGLRRRPANVTV--DTSDNXXXXXXXPSGLHRRQKVLSVVF 118
           L+LE HSLRTTD SF+ESLYGLRR+ A + +  D++          SGL +RQ++LSVVF
Sbjct: 61  LILEGHSLRTTDGSFAESLYGLRRKSARLRLRKDSARKDSSEEVQHSGLEKRQRILSVVF 120

Query: 119 LVVLPYLKSKLHTIYNREREARLQATLWGDDNEAGVGGFEQ-------DSLVS-TPTLDA 170
           LVVLPY KSKLH IYN+EREARL+ +LWG +++    GF++       DS+VS  P+ + 
Sbjct: 121 LVVLPYFKSKLHAIYNKEREARLRESLWGAEDQ----GFDEADFFTGDDSIVSREPSGNE 176

Query: 171 HASIAARVRSRVQKFVGFCYPWLHASTEGMHFTYKMLYLLDATGFYSLALHVLRVQVCRA 230
             S+  ++ ++++KF+  CYPW+HAS+EG+ FTY++LYLLDATGFYSL L  L +QVCRA
Sbjct: 177 ELSVRVQLATKIKKFIAVCYPWIHASSEGLSFTYQLLYLLDATGFYSLGLQALGIQVCRA 236

Query: 231 TGQELMDTSSRISKMRSRERERLRGPQWLKTLQGALLSCSYTVLDYAQTGLIAAVFFFKM 290
           TGQELMDTSSRISK+R+ ERERLRGP WLKT+QGALLSCSY VLDYAQTGLIAAVF FKM
Sbjct: 237 TGQELMDTSSRISKIRNHERERLRGPPWLKTVQGALLSCSYAVLDYAQTGLIAAVFIFKM 296

Query: 291 MEWWYQSAEERMSAPTVYXXXXXXXXXKVAKEGVPLPPDRAVCPLCLQKRVNPSVISVSG 350
           MEWWYQSAEER+SAPTVY         K+AKEG+PLPPDR++C LCLQKR NPSV++VSG
Sbjct: 297 MEWWYQSAEERLSAPTVYPPPPPPPAPKMAKEGIPLPPDRSLCALCLQKRANPSVVTVSG 356

Query: 351 FVFCYACVFKYISQYKRCPVTLMPSTVDQ 379
           FVFCY+CVFKY+S+YKRCPVTL+P++VDQ
Sbjct: 357 FVFCYSCVFKYVSKYKRCPVTLIPASVDQ 385