Miyakogusa Predicted Gene

Lj1g3v4997250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4997250.1 Non Chatacterized Hit- tr|A9NUV7|A9NUV7_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,71.67,2e-19,KH_TYPE_1,K Homology domain, type 1; KH
DOMAIN-CONTAINING PROTEIN,NULL; KH DOMAIN CONTAINING RNA
BIN,CUFF.33914.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr...   105   5e-24
AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr...   100   1e-22
AT5G15270.1 | Symbols:  | RNA-binding KH domain-containing prote...    52   6e-08
AT5G15270.2 | Symbols:  | RNA-binding KH domain-containing prote...    52   6e-08
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing p...    51   1e-07
AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing p...    51   1e-07
AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing p...    51   1e-07
AT1G14170.2 | Symbols:  | RNA-binding KH domain-containing prote...    50   2e-07
AT1G14170.1 | Symbols:  | RNA-binding KH domain-containing prote...    50   2e-07
AT5G46190.1 | Symbols:  | RNA-binding KH domain-containing prote...    50   2e-07
AT1G14170.3 | Symbols:  | RNA-binding KH domain-containing prote...    50   2e-07

>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
           protein | chr3:1250762-1254272 REVERSE LENGTH=577
          Length = 577

 Score =  105 bits (263), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/64 (79%), Positives = 56/64 (87%)

Query: 42  IAAAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPER 101
           +   EK+WPGWPGE+VFRMLVPA KVG IIGRKG+ IKKIVEETRAR+KILDGPPGT ER
Sbjct: 173 VGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTER 232

Query: 102 AVSV 105
           AV V
Sbjct: 233 AVMV 236


>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
           protein | chr4:13197280-13199539 FORWARD LENGTH=495
          Length = 495

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 53/62 (85%)

Query: 44  AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           +AE++WPGWPG+ VFRM+VP  KVG IIGRKG+FIKK+ EETRAR+K+LDGP  TP+R V
Sbjct: 62  SAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIV 121

Query: 104 SV 105
            +
Sbjct: 122 LI 123


>AT5G15270.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:4958738-4960947 FORWARD LENGTH=548
          Length = 548

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSH-NF 113
           ++VFR L P  K+G +IGR G+ +K++  +TR++++I +  PG  ER +++ S S   N 
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108

Query: 114 FTD 116
           F D
Sbjct: 109 FGD 111


>AT5G15270.2 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:4958738-4960947 FORWARD LENGTH=548
          Length = 548

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSH-NF 113
           ++VFR L P  K+G +IGR G+ +K++  +TR++++I +  PG  ER +++ S S   N 
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108

Query: 114 FTD 116
           F D
Sbjct: 109 FGD 111


>AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
           protein | chr5:25743442-25747380 FORWARD LENGTH=866
          Length = 866

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 37/54 (68%)

Query: 54  GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLS 107
           G + FR+L P   VG +IG+ G  IK++ + T A++++ + P G+P+R +++++
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIA 98


>AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing
           protein | chr5:25743442-25747380 FORWARD LENGTH=857
          Length = 857

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 37/54 (68%)

Query: 54  GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLS 107
           G + FR+L P   VG +IG+ G  IK++ + T A++++ + P G+P+R +++++
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIA 98


>AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing
           protein | chr5:25743442-25746742 FORWARD LENGTH=824
          Length = 824

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 37/54 (68%)

Query: 54  GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLS 107
           G + FR+L P   VG +IG+ G  IK++ + T A++++ + P G+P+R +++++
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIA 98


>AT1G14170.2 | Symbols:  | RNA-binding KH domain-containing protein
           | chr1:4843463-4845253 REVERSE LENGTH=446
          Length = 446

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSH-NF 113
           ++V+R L P  K G IIG+ GE  K+I  ET++ ++I +  PG  ER V++ S +   N 
Sbjct: 10  DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 69

Query: 114 FTD 116
           F D
Sbjct: 70  FGD 72


>AT1G14170.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr1:4843463-4845253 REVERSE LENGTH=454
          Length = 454

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSH-NF 113
           ++V+R L P  K G IIG+ GE  K+I  ET++ ++I +  PG  ER V++ S +   N 
Sbjct: 18  DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 77

Query: 114 FTD 116
           F D
Sbjct: 78  FGD 80


>AT5G46190.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:18723435-18725834 REVERSE LENGTH=644
          Length = 644

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 35/50 (70%)

Query: 57  VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVL 106
           V+R+L P+  +G +IG+ G+ I  I +ETRAR+K++D  PG  ER +++ 
Sbjct: 45  VYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIF 94


>AT1G14170.3 | Symbols:  | RNA-binding KH domain-containing protein
           | chr1:4843463-4845253 REVERSE LENGTH=479
          Length = 479

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSH-NF 113
           ++V+R L P  K G IIG+ GE  K+I  ET++ ++I +  PG  ER V++ S +   N 
Sbjct: 43  DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 102

Query: 114 FTD 116
           F D
Sbjct: 103 FGD 105