Miyakogusa Predicted Gene
- Lj1g3v4997240.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4997240.1 Non Chatacterized Hit- tr|I1QUH1|I1QUH1_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1,40.6,5e-16,KH
DOMAIN-CONTAINING PROTEIN,NULL; KH DOMAIN CONTAINING RNA BINDING
PROTEIN,NULL; K homology RNA-bin,CUFF.33913.1
(455 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr... 501 e-142
AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr... 285 3e-77
AT5G15270.1 | Symbols: | RNA-binding KH domain-containing prote... 102 5e-22
AT5G15270.2 | Symbols: | RNA-binding KH domain-containing prote... 102 5e-22
AT1G51580.1 | Symbols: | RNA-binding KH domain-containing prote... 91 2e-18
AT1G14170.3 | Symbols: | RNA-binding KH domain-containing prote... 89 9e-18
AT1G14170.1 | Symbols: | RNA-binding KH domain-containing prote... 88 1e-17
AT1G14170.2 | Symbols: | RNA-binding KH domain-containing prote... 88 1e-17
AT4G18375.1 | Symbols: | RNA-binding KH domain-containing prote... 82 8e-16
AT4G18375.2 | Symbols: | RNA-binding KH domain-containing prote... 82 9e-16
AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing p... 80 3e-15
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing p... 80 3e-15
AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing p... 80 3e-15
AT5G46190.1 | Symbols: | RNA-binding KH domain-containing prote... 77 3e-14
AT5G53060.1 | Symbols: | RNA-binding KH domain-containing prote... 74 2e-13
AT2G22600.1 | Symbols: | RNA-binding KH domain-containing prote... 64 2e-10
AT5G04430.2 | Symbols: BTR1, BTR1L | binding to TOMV RNA 1L (lon... 61 2e-09
AT5G04430.1 | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (lon... 60 2e-09
AT5G09560.1 | Symbols: | RNA-binding KH domain-containing prote... 56 4e-08
AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding | chr... 55 8e-08
AT5G53060.2 | Symbols: | RNA-binding KH domain-containing prote... 51 2e-06
>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
protein | chr3:1250762-1254272 REVERSE LENGTH=577
Length = 577
Score = 501 bits (1290), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/400 (65%), Positives = 302/400 (75%), Gaps = 11/400 (2%)
Query: 42 IAAAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPER 101
+ EK+WPGWPGE+VFRMLVPA KVG IIGRKG+ IKKIVEETRAR+KILDGPPGT ER
Sbjct: 173 VGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTER 232
Query: 102 AVMVSAKEEPDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGS 161
AVMVS KEEP+SSLPP++DGLLRVH R++DGL+ +++ A +KVST+LLVPASQAGS
Sbjct: 233 AVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPP--PSKVSTRLLVPASQAGS 290
Query: 162 LIGKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLR 221
LIGKQGGTVK+IQEAS CIVRVLG+EDLP FALQDDRVVEV+G+PT VH+A+ELI SHLR
Sbjct: 291 LIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLR 350
Query: 222 KFLVDRGVIPIFEMNMQTANSHHVEHM-PPHQSWXXXXXXXXXXXXXXXXXXXXXXXXXX 280
KFLVDR +IP FE MQ + ++HM PPHQSW
Sbjct: 351 KFLVDRSIIPFFENQMQKP-TRQMDHMPPPHQSWGPPQGHAPSVGGGGYGHNPPPYMQPP 409
Query: 281 XRQHDNYYPPAEM-PPPVDRQPHYGISAYGRDASVGVHASSNTQSAPSIVTQITQQMQIP 339
R HD+YYPP EM PP+++QPH GISAYGR+ + VH SS + P + Q+TQQMQIP
Sbjct: 410 PR-HDSYYPPPEMRQPPMEKQPHQGISAYGREPPMNVHVSS---APPMVAQQVTQQMQIP 465
Query: 340 LSYADAVIGTAGASISYIRRASGATVAIQETRGVPGEMTVEISGTAAQVQTAQQLIQNFM 399
LSYADAVIGT+G++ISY RR SGATV IQETRGVPGEMTVE+SGT +QVQTA QLIQNFM
Sbjct: 466 LSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFM 525
Query: 400 AEXXXXXXXXXXXXTVGPPDQGYNSYPAHGSVYTSPPSNP 439
AE TV P QGYN Y HGSVY + P+NP
Sbjct: 526 AE--AGAPAPAQPQTVAPEQQGYNPYATHGSVYAAAPTNP 563
>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
protein | chr4:13197280-13199539 FORWARD LENGTH=495
Length = 495
Score = 285 bits (730), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 155/359 (43%), Positives = 218/359 (60%), Gaps = 16/359 (4%)
Query: 44 AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
+AE++WPGWPG+ VFRM+VP KVG IIGRKG+FIKK+ EETRAR+K+LDGP TP+R V
Sbjct: 62 SAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIV 121
Query: 104 MVSAKEEPDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLI 163
++S KEEP++ + PA+D +LRV +RV +ND + S +LLV ++QA +LI
Sbjct: 122 LISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLI 181
Query: 164 GKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKF 223
GKQG +KSI E S VR+L E+ P +A QD+R+V++ G+ + KA+E IV HLR+F
Sbjct: 182 GKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRRF 241
Query: 224 LVDRGVIPIFEMNMQTANSHHVEHMPPHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQ 283
LVD V+P+FE S + P +S R
Sbjct: 242 LVDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNLMEPDFSLLARREPLFLERD 301
Query: 284 H--DNYYPPAEMPPPVDRQPHYGISAYGRDASVGV-HASSNTQSAPSIVTQITQQMQIPL 340
D+ P+ G+S Y +D + H+ + + + VTQ++Q MQIP
Sbjct: 302 SRVDSRVQPS------------GVSIYSQDPVLSARHSPGLARVSSAFVTQVSQTMQIPF 349
Query: 341 SYADAVIGTAGASISYIRRASGATVAIQETRGVPGEMTVEISGTAAQVQTAQQLIQNFM 399
SYA+ +IG GA+I+YIRR SGAT+ I+E+ P ++TVEI GT +QVQTA+QLIQ F+
Sbjct: 350 SYAEDIIGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTTSQVQTAEQLIQEFI 407
>AT5G15270.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 98/175 (56%), Gaps = 13/175 (7%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMV-------SA 107
++VFR L P K+G +IGR G+ +K++ +TR++++I + PG ER + + +A
Sbjct: 49 DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108
Query: 108 KEEPDSSLPPAIDGLLRVHKRVI--DGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGK 165
+ + L PA D L R+H RV+ D DS +V+ KLLVP+ Q G ++G+
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEK----QVTAKLLVPSDQIGCILGR 164
Query: 166 QGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
G V++I+ + +R++ ++P AL D ++++ G+ V KA+ I S L
Sbjct: 165 GGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRL 219
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 96/173 (55%), Gaps = 6/173 (3%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E R++ P + +IG+ G I ++ +ETRA +K+ + + +SA+E + +
Sbjct: 283 EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDA 342
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
P I+ ++R+ + D +E DS G+V+ +T+LLVP+S+ G ++GK G + ++
Sbjct: 343 YSPTIEAVMRLQPKCSDKVERDS-----GLVS-FTTRLLVPSSRIGCILGKGGAIITEMR 396
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDR 227
+ +R+LG E+LP A DD +V++ G+ +A+ I S LR + DR
Sbjct: 397 RMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDR 449
>AT5G15270.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 98/175 (56%), Gaps = 13/175 (7%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMV-------SA 107
++VFR L P K+G +IGR G+ +K++ +TR++++I + PG ER + + +A
Sbjct: 49 DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108
Query: 108 KEEPDSSLPPAIDGLLRVHKRVI--DGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGK 165
+ + L PA D L R+H RV+ D DS +V+ KLLVP+ Q G ++G+
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEK----QVTAKLLVPSDQIGCILGR 164
Query: 166 QGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
G V++I+ + +R++ ++P AL D ++++ G+ V KA+ I S L
Sbjct: 165 GGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRL 219
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 96/173 (55%), Gaps = 6/173 (3%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E R++ P + +IG+ G I ++ +ETRA +K+ + + +SA+E + +
Sbjct: 283 EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDA 342
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
P I+ ++R+ + D +E DS G+V+ +T+LLVP+S+ G ++GK G + ++
Sbjct: 343 YSPTIEAVMRLQPKCSDKVERDS-----GLVS-FTTRLLVPSSRIGCILGKGGAIITEMR 396
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDR 227
+ +R+LG E+LP A DD +V++ G+ +A+ I S LR + DR
Sbjct: 397 RMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDR 449
>AT1G51580.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:19125612-19128102 FORWARD LENGTH=621
Length = 621
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 10/172 (5%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E FR+L PA KVG +IG+ G ++ + E+ A +K+ D + ER +++SA+E +
Sbjct: 275 EVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERR 334
Query: 115 LPPAIDGLLRVHKRVID-GLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSI 173
A DG++RVH R+++ G E S+ VVA +LLV + G L+GK G + +
Sbjct: 335 HSLAQDGVMRVHNRIVEIGFE-----PSAAVVA----RLLVHSPYIGRLLGKGGHLISEM 385
Query: 174 QEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLV 225
+ A+ +RV + + Q D +V+V+G+ V A+ I+ LR+ +
Sbjct: 386 RRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMF 437
>AT1G14170.3 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=479
Length = 479
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 13/178 (7%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV-MVSAKEE--- 110
++V+R L P K G IIG+ GE K+I ET++ ++I + PG ER V M S EE
Sbjct: 43 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 102
Query: 111 --PDSSL-PPAIDGLLRVHKRVIDGLENDSTHASSGVVAK---VSTKLLVPASQAGSLIG 164
D L PA+D L +VH V+ + D + + V+ ++LVP+ Q G +IG
Sbjct: 103 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 162
Query: 165 KQGGTVKSIQEASNCIVRVLGAEDLPSFA--LQDDRVVEVLGDPTGVHKAVELIVSHL 220
K G +++++ +N +RV+ + LP+ A L D ++ ++G+P V +A+ + S L
Sbjct: 163 KGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 219
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 97/180 (53%), Gaps = 9/180 (5%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E + PA VGG+IG+ G FI +I +ET A +++ + + +S+KE +
Sbjct: 268 EFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ 327
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
PA++ +R+ +R + + D+ + +ST+LLV +SQ G LIGK G + ++
Sbjct: 328 -SPAVNAAIRLQQRCSEKVGKDANDLA------ISTRLLVSSSQIGCLIGKGGAVISEMR 380
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLR--KFLVDRGVIPI 232
+ +R+L ED+P A +D+ +V++ G P KA+ ++ LR F +D G++ +
Sbjct: 381 SVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 440
>AT1G14170.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=454
Length = 454
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 13/178 (7%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV-MVSAKEE--- 110
++V+R L P K G IIG+ GE K+I ET++ ++I + PG ER V M S EE
Sbjct: 18 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 77
Query: 111 --PDSSL-PPAIDGLLRVHKRVIDGLENDSTHASSGVVAK---VSTKLLVPASQAGSLIG 164
D L PA+D L +VH V+ + D + + V+ ++LVP+ Q G +IG
Sbjct: 78 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 137
Query: 165 KQGGTVKSIQEASNCIVRVLGAEDLPSFA--LQDDRVVEVLGDPTGVHKAVELIVSHL 220
K G +++++ +N +RV+ + LP+ A L D ++ ++G+P V +A+ + S L
Sbjct: 138 KGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 194
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 97/180 (53%), Gaps = 9/180 (5%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E + PA VGG+IG+ G FI +I +ET A +++ + + +S+KE +
Sbjct: 243 EFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ 302
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
PA++ +R+ +R + + D+ + +ST+LLV +SQ G LIGK G + ++
Sbjct: 303 -SPAVNAAIRLQQRCSEKVGKDANDLA------ISTRLLVSSSQIGCLIGKGGAVISEMR 355
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLR--KFLVDRGVIPI 232
+ +R+L ED+P A +D+ +V++ G P KA+ ++ LR F +D G++ +
Sbjct: 356 SVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 415
>AT1G14170.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=446
Length = 446
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 13/178 (7%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV-MVSAKEE--- 110
++V+R L P K G IIG+ GE K+I ET++ ++I + PG ER V M S EE
Sbjct: 10 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 69
Query: 111 --PDSSL-PPAIDGLLRVHKRVIDGLENDSTHASSGVVAK---VSTKLLVPASQAGSLIG 164
D L PA+D L +VH V+ + D + + V+ ++LVP+ Q G +IG
Sbjct: 70 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 129
Query: 165 KQGGTVKSIQEASNCIVRVLGAEDLPSFA--LQDDRVVEVLGDPTGVHKAVELIVSHL 220
K G +++++ +N +RV+ + LP+ A L D ++ ++G+P V +A+ + S L
Sbjct: 130 KGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 186
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 97/180 (53%), Gaps = 9/180 (5%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E + PA VGG+IG+ G FI +I +ET A +++ + + +S+KE +
Sbjct: 235 EFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ 294
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
PA++ +R+ +R + + D+ + +ST+LLV +SQ G LIGK G + ++
Sbjct: 295 -SPAVNAAIRLQQRCSEKVGKDANDLA------ISTRLLVSSSQIGCLIGKGGAVISEMR 347
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLR--KFLVDRGVIPI 232
+ +R+L ED+P A +D+ +V++ G P KA+ ++ LR F +D G++ +
Sbjct: 348 SVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 407
>AT4G18375.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10154836 FORWARD LENGTH=532
Length = 532
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 16/172 (9%)
Query: 57 VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMV--SAKEE---- 110
V+R+L P VGG+IG+ G+ I I T+A++K+ D G +R + + S KE+
Sbjct: 37 VYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEI 96
Query: 111 -----PDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGK 165
+ L A D LL+V+ ++ E ++T + +LLVP SQ+ SLIGK
Sbjct: 97 GFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGK 156
Query: 166 QGGTVKSIQEASNCIVRVLGAEDL--PS--FALQDDRVVEVLGDPTGVHKAV 213
G +K I+ + V+V+ ++D+ PS A++ D VV + G+P V +A+
Sbjct: 157 AGENIKRIRRRTRASVKVV-SKDVSDPSHVCAMEYDNVVVISGEPESVKQAL 207
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 23/171 (13%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDG--PPGTPERAVMVSAKEEPD 112
E VF++L P + +IG+ G IK+I E + + +++ D G E ++V+A E PD
Sbjct: 311 ELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPD 370
Query: 113 SSLPPAIDGLLRVHKRVID-GLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVK 171
A++ +L + + + D EN V +LLV + G +IGK G +
Sbjct: 371 DMKSMAVEAVLLLQEYINDEDAEN------------VKMQLLVSSKVIGCVIGKSGSVIN 418
Query: 172 SIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRK 222
I++ +N A S +DD +VEV G+ + V A+ IV LR+
Sbjct: 419 EIRKRTN-------ANICISKGKKDD-LVEVSGEVSSVRDALIQIVLRLRE 461
>AT4G18375.2 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10155125 FORWARD LENGTH=606
Length = 606
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 16/172 (9%)
Query: 57 VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMV--SAKEE---- 110
V+R+L P VGG+IG+ G+ I I T+A++K+ D G +R + + S KE+
Sbjct: 37 VYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEI 96
Query: 111 -----PDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGK 165
+ L A D LL+V+ ++ E ++T + +LLVP SQ+ SLIGK
Sbjct: 97 GFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGK 156
Query: 166 QGGTVKSIQEASNCIVRVLGAEDL--PS--FALQDDRVVEVLGDPTGVHKAV 213
G +K I+ + V+V+ ++D+ PS A++ D VV + G+P V +A+
Sbjct: 157 AGENIKRIRRRTRASVKVV-SKDVSDPSHVCAMEYDNVVVISGEPESVKQAL 207
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 23/171 (13%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDG--PPGTPERAVMVSAKEEPD 112
E VF++L P + +IG+ G IK+I E + + +++ D G E ++V+A E PD
Sbjct: 311 ELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPD 370
Query: 113 SSLPPAIDGLLRVHKRVID-GLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVK 171
A++ +L + + + D EN V +LLV + G +IGK G +
Sbjct: 371 DMKSMAVEAVLLLQEYINDEDAEN------------VKMQLLVSSKVIGCVIGKSGSVIN 418
Query: 172 SIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRK 222
I++ +N A S +DD +VEV G+ + V A+ IV LR+
Sbjct: 419 EIRKRTN-------ANICISKGKKDD-LVEVSGEVSSVRDALIQIVLRLRE 461
>AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=857
Length = 857
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Query: 57 VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSSLP 116
VF++L GG+IG G+ ++ + ET A + + + ER + V+A E P+
Sbjct: 453 VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSS 512
Query: 117 PAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 176
PA ++ + R+ + N +G + ++ +L+VP SQ G ++GK G V +++
Sbjct: 513 PAQKAIMLIFSRLFELATNKIL--DNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKT 570
Query: 177 SNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLR 221
+ +++L E P ++D+VV++ G+ V +A+ I S LR
Sbjct: 571 TGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLR 615
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 18/174 (10%)
Query: 54 GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDS 113
G + FR+L P VG +IG+ G IK++ + T A++++ + P G+P+R + + A+ + S
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 114 SLPPAIDG--------------LLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQA 159
+ + + + +I E + A S V +LL +S A
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVV---CRLLTESSHA 161
Query: 160 GSLIGKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAV 213
G++IGK G V SI++ + C + + E+LP A DD +VEV G+ V KA+
Sbjct: 162 GAVIGKGGQMVGSIRKETGCKISIR-IENLPICADTDDEMVEVEGNAIAVKKAL 214
>AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=866
Length = 866
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Query: 57 VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSSLP 116
VF++L GG+IG G+ ++ + ET A + + + ER + V+A E P+
Sbjct: 453 VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSS 512
Query: 117 PAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 176
PA ++ + R+ + N +G + ++ +L+VP SQ G ++GK G V +++
Sbjct: 513 PAQKAIMLIFSRLFELATNKIL--DNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKT 570
Query: 177 SNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLR 221
+ +++L E P ++D+VV++ G+ V +A+ I S LR
Sbjct: 571 TGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLR 615
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 18/174 (10%)
Query: 54 GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDS 113
G + FR+L P VG +IG+ G IK++ + T A++++ + P G+P+R + + A+ + S
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 114 SLPPAIDG--------------LLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQA 159
+ + + + +I E + A S V +LL +S A
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVV---CRLLTESSHA 161
Query: 160 GSLIGKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAV 213
G++IGK G V SI++ + C + + E+LP A DD +VEV G+ V KA+
Sbjct: 162 GAVIGKGGQMVGSIRKETGCKISIR-IENLPICADTDDEMVEVEGNAIAVKKAL 214
>AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25746742 FORWARD LENGTH=824
Length = 824
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Query: 57 VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSSLP 116
VF++L GG+IG G+ ++ + ET A + + + ER + V+A E P+
Sbjct: 453 VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSS 512
Query: 117 PAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 176
PA ++ + R+ + N +G + ++ +L+VP SQ G ++GK G V +++
Sbjct: 513 PAQKAIMLIFSRLFELATNKIL--DNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKT 570
Query: 177 SNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLR 221
+ +++L E P ++D+VV++ G+ V +A+ I S LR
Sbjct: 571 TGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLR 615
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 18/174 (10%)
Query: 54 GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDS 113
G + FR+L P VG +IG+ G IK++ + T A++++ + P G+P+R + + A+ + S
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 114 SLPPAIDG--------------LLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQA 159
+ + + + +I E + A S V +LL +S A
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVV---CRLLTESSHA 161
Query: 160 GSLIGKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAV 213
G++IGK G V SI++ + C + + E+LP A DD +VEV G+ V KA+
Sbjct: 162 GAVIGKGGQMVGSIRKETGCKISIR-IENLPICADTDDEMVEVEGNAIAVKKAL 214
>AT5G46190.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:18723435-18725834 REVERSE LENGTH=644
Length = 644
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 57 VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVM----VSAKE--- 109
V+R+L P+ +G +IG+ G+ I I +ETRAR+K++D PG ER + VS K+
Sbjct: 45 VYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIV 104
Query: 110 -----EPDSSLP--PAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSL 162
E D S+P A LL+VH ++ L + + +LLVP+SQ +
Sbjct: 105 DIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIV 164
Query: 163 IGKQGGTVKSIQEASNCIVRVLGAEDLP----SFALQDDRVVEVLGDPTGVHKAV 213
IGK G +K+I+ + V+V+ ++D+ + A+ D +V + G+ V KA+
Sbjct: 165 IGKSGSIIKNIRGRTRANVKVV-SKDVSDPSHTCAMDFDNIVMISGETESVKKAL 218
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 18/184 (9%)
Query: 51 GWPGES-----VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVM- 104
G+ G S +++ + K+G +IG+ G IK I + + + +++ D + V+
Sbjct: 307 GFGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVIT 366
Query: 105 VSAKEEPDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIG 164
V+A E PD A++ +L + +++ D E+ KV +LLV + G +IG
Sbjct: 367 VTATESPDDLKSMAVEAVLLLQEKINDEDED-----------KVKMQLLVSSKVIGCIIG 415
Query: 165 KQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLR-KF 223
K G + I++ + + + + P A +D +VE+ G+ + V A+ IV LR
Sbjct: 416 KSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDV 475
Query: 224 LVDR 227
L DR
Sbjct: 476 LRDR 479
>AT5G53060.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21518197 FORWARD LENGTH=652
Length = 652
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 17/193 (8%)
Query: 47 KKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVS 106
K P + +R+L K GG+IG+ G IK I + T A + + + PG ER + +S
Sbjct: 59 KSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEIS 118
Query: 107 --AKEEPDSSLP---PAIDGLLRVHKRVIDG-----------LENDSTHASSGVVAKVST 150
+ +PD +P PA + L VH R+++ E + +V T
Sbjct: 119 DNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVT 178
Query: 151 KLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAE-DLPSFALQDDRVVEVLGDPTGV 209
+L+V G L+GK G ++ ++ + +R+L E +LP + +V+++G+ V
Sbjct: 179 RLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAV 238
Query: 210 HKAVELIVSHLRK 222
A+ ++ S LR+
Sbjct: 239 KNALAIVSSRLRE 251
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 13/177 (7%)
Query: 52 WPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEP 111
+ E VF++L PA K+ ++G I + E V++ D G+ E+ + +S++E P
Sbjct: 321 YSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAP 380
Query: 112 DSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVK 171
D PA + LL + ++ID + + ++T+LLVP+ + L GK G+V
Sbjct: 381 DDPFFPAQEALLHIQTQIIDLIPDKDN--------LITTRLLVPSRDSICLEGK-AGSVS 431
Query: 172 SIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKA-VELIV---SHLRKFL 224
I + V++L E++P A +D V+++ G+ +A VEL + SH+ K L
Sbjct: 432 EISRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMFKEL 488
>AT2G22600.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:9596617-9599050 FORWARD LENGTH=632
Length = 632
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 170/424 (40%), Gaps = 52/424 (12%)
Query: 11 FEAEQVIENSELPXXXXXXXXXXXXXXXXRPIAAAEKKWPGWPGES-----VFRMLVPAH 65
+E+ NSE P I A+ + P G S VF+++ +
Sbjct: 227 YESLSTDGNSEDPHSEFFPNLRSSSLSNATEIVASNRHLPYDGGNSTERKVVFKIIFTSV 286
Query: 66 KVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSSLPPAIDGLLRV 125
GGIIG++G I+ + ET A + + + ER V VSA+E +S A + L V
Sbjct: 287 VAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRYSHAQNALALV 346
Query: 126 HKRVID---------GLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 176
R ++ GL N A V TKLLVP+ A S G G ++I A
Sbjct: 347 FARSVEIDVEKGLRPGLHNG---------AIVKTKLLVPSHFANSFNGN--GNREAII-A 394
Query: 177 SNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDRGVIPIFEMN 236
+ V + + + +++ V+E+ G+ + V KA+ + S LR+ L+ + V+ EM
Sbjct: 395 TGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVLG--EMR 452
Query: 237 MQTANSH-------HVEHMPPHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHDNYYP 289
+ +N + + ++ P Q N
Sbjct: 453 ARVSNPYESAGGRSQIYNLQPSQQ---DASRGDSLSVSAAVPDLKMVRSGAEVLKSNSVM 509
Query: 290 PAEMPPPVDRQPHYGI--SAYGRDASVG---VHASSNT-------QSAPSIVTQITQQMQ 337
E+ VD + + S D + G + SSN +S V +IT ++
Sbjct: 510 HTEVLKEVDELNDFTLPQSLLEEDLTQGMKQLQMSSNGDVSSLPPRSKGVSVRKITLELA 569
Query: 338 IPLSYADAVIGTAGASISYIRRASGATVAIQETRGVPGEMTVEISGTAAQVQTAQQLIQN 397
+ ++ G G + +++ SGA V +++ G E TV ISG Q +TA LI++
Sbjct: 570 VEKDALGSLYGRDGTGVDNLQQISGANVDVKDPTGT--EATVLISGNPEQARTAMSLIES 627
Query: 398 FMAE 401
+ +
Sbjct: 628 ILTD 631
>AT5G04430.2 | Symbols: BTR1, BTR1L | binding to TOMV RNA 1L (long
form) | chr5:1250602-1253523 REVERSE LENGTH=334
Length = 334
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 18/168 (10%)
Query: 58 FRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGP---PGTPERAVMVSAKEEPDSS 114
R LV G +IG+ G I + ++ AR+++ PGT +R +M+S S
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISG------S 90
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSG--VVAKVSTKLLVPASQAGSLIGKQGGTVKS 172
+ ++GL + ++D L ++ HA G V + +L+VP S G +IGK G T+KS
Sbjct: 91 IKEVVNGL----ELILDKLHSE-LHAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKS 145
Query: 173 IQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
E S +++ ++ +F DR+V + G +A++LI++ L
Sbjct: 146 FIEESKAGIKISPLDN--TFYGLSDRLVTLSGTFEEQMRAIDLILAKL 191
>AT5G04430.1 | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (long
form) | chr5:1250602-1253523 REVERSE LENGTH=313
Length = 313
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 18/168 (10%)
Query: 58 FRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGP---PGTPERAVMVSAKEEPDSS 114
R LV G +IG+ G I + ++ AR+++ PGT +R +M+S S
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISG------S 90
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSG--VVAKVSTKLLVPASQAGSLIGKQGGTVKS 172
+ ++GL + ++D L ++ HA G V + +L+VP S G +IGK G T+KS
Sbjct: 91 IKEVVNGL----ELILDKLHSE-LHAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKS 145
Query: 173 IQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
E S +++ ++ +F DR+V + G +A++LI++ L
Sbjct: 146 FIEESKAGIKISPLDN--TFYGLSDRLVTLSGTFEEQMRAIDLILAKL 191
>AT5G09560.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:2967170-2969655 FORWARD LENGTH=612
Length = 612
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
Query: 85 TRARVKILDGPPGTPERAVMVSAKEEPDSSLPPAIDGLLRVHKRVIDGLENDSTHA-SSG 143
T A + + D P ER V ++A E+ + L+ V + EN + SG
Sbjct: 333 TDASISVGDRHPDCDERLVTITAFEKTKDITSESQRALVLVFSNM---YENATAKVLDSG 389
Query: 144 VVAKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVL 203
+ + ++ +L+V ++Q L+G++G +IQ+ + + VL E P ++++VV++
Sbjct: 390 LTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVSENNQVVQIS 449
Query: 204 GDPTGVHKAVELIVSHLRKFLVDR 227
G+ V +A+ + S LR+ L+++
Sbjct: 450 GEFPNVREAINQVTSMLREDLINQ 473
>AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding |
chr2:935432-935975 FORWARD LENGTH=153
Length = 153
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 16/140 (11%)
Query: 89 VKILDGPPGTPERAVMVSAKEEP--------DSSLPPAIDGLLRVHKRVIDGLENDSTHA 140
+++ + PG ER V + + E + + PA D L +VH V+ +D
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDY 60
Query: 141 SSGVVAK-----VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLP--SFA 193
+ V+ ++LVP+ Q G LIGK G +++++ +N +RV ++LP + A
Sbjct: 61 NDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRN-DNLPMCALA 119
Query: 194 LQDDRVVEVLGDPTGVHKAV 213
L D +++++GDP+ V +A+
Sbjct: 120 LSHDELLQIIGDPSAVREAL 139
>AT5G53060.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21520310 FORWARD LENGTH=198
Length = 198
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 47 KKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVS 106
K P + +R+L K GG+IG+ G IK I + T A + + + PG ER + +S
Sbjct: 59 KSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEIS 118
Query: 107 --AKEEPDSSLP---PAIDGLLRVHKRVID 131
+ +PD +P PA + L VH R+++
Sbjct: 119 DNRRRDPDGRMPSFSPAQEALFSVHDRILE 148