Miyakogusa Predicted Gene

Lj1g3v4995150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4995150.1 Non Chatacterized Hit- tr|K3Z5F8|K3Z5F8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si021776,61.43,3e-19,Eukaryotic type KH-domain (KH-domain type
I),NULL; no description,NULL; KH_1,K Homology domain,
type,CUFF.33905.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr...   106   4e-24
AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr...    98   1e-21
AT5G46190.1 | Symbols:  | RNA-binding KH domain-containing prote...    49   7e-07
AT5G15270.1 | Symbols:  | RNA-binding KH domain-containing prote...    49   1e-06
AT5G15270.2 | Symbols:  | RNA-binding KH domain-containing prote...    49   1e-06
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing p...    48   2e-06
AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing p...    48   2e-06
AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing p...    48   2e-06

>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
           protein | chr3:1250762-1254272 REVERSE LENGTH=577
          Length = 577

 Score =  106 bits (265), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/65 (78%), Positives = 56/65 (86%)

Query: 42  IAAAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPER 101
           +   EK+WPGWPGE+VFRMLVPA KVG IIGRKG+ IKKIVEETRAR+KILDGPPGT ER
Sbjct: 173 VGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTER 232

Query: 102 AVQCS 106
           AV  S
Sbjct: 233 AVMVS 237


>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
           protein | chr4:13197280-13199539 FORWARD LENGTH=495
          Length = 495

 Score = 98.2 bits (243), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 53/63 (84%)

Query: 44  AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           +AE++WPGWPG+ VFRM+VP  KVG IIGRKG+FIKK+ EETRAR+K+LDGP  TP+R V
Sbjct: 62  SAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIV 121

Query: 104 QCS 106
             S
Sbjct: 122 LIS 124


>AT5G46190.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:18723435-18725834 REVERSE LENGTH=644
          Length = 644

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 57  VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVQ--CS 106
           V+R+L P+  +G +IG+ G+ I  I +ETRAR+K++D  PG  ER +   CS
Sbjct: 45  VYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCS 96


>AT5G15270.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:4958738-4960947 FORWARD LENGTH=548
          Length = 548

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 34/49 (69%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           ++VFR L P  K+G +IGR G+ +K++  +TR++++I +  PG  ER +
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVI 97


>AT5G15270.2 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:4958738-4960947 FORWARD LENGTH=548
          Length = 548

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 34/49 (69%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           ++VFR L P  K+G +IGR G+ +K++  +TR++++I +  PG  ER +
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVI 97


>AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
           protein | chr5:25743442-25747380 FORWARD LENGTH=866
          Length = 866

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 33/50 (66%)

Query: 54  GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           G + FR+L P   VG +IG+ G  IK++ + T A++++ + P G+P+R +
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVI 94


>AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing
           protein | chr5:25743442-25746742 FORWARD LENGTH=824
          Length = 824

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 33/50 (66%)

Query: 54  GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           G + FR+L P   VG +IG+ G  IK++ + T A++++ + P G+P+R +
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVI 94


>AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing
           protein | chr5:25743442-25747380 FORWARD LENGTH=857
          Length = 857

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 33/50 (66%)

Query: 54  GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           G + FR+L P   VG +IG+ G  IK++ + T A++++ + P G+P+R +
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVI 94