Miyakogusa Predicted Gene

Lj1g3v4981000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4981000.1 Non Chatacterized Hit- tr|D8RZ40|D8RZ40_SELML
Putative uncharacterized protein OS=Selaginella
moelle,65,3e-19,TatA_E,Twin-arginine translocation protein TatA/E;
MttA_Hcf106,Twin-arginine translocation protein T,CUFF.33761.1
         (141 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28750.1 | Symbols:  | Bacterial sec-independent translocatio...   103   5e-23
AT5G52440.1 | Symbols: HCF106 | Bacterial sec-independent transl...    49   1e-06

>AT5G28750.1 | Symbols:  | Bacterial sec-independent translocation
           protein mttA/Hcf106 | chr5:10784142-10785677 REVERSE
           LENGTH=147
          Length = 147

 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 72/105 (68%), Gaps = 4/105 (3%)

Query: 37  RSIASVAPPITTTPRRRNKGTALTCNALFGLGVPELXXXXXXXXXXFGPKKLPEVGRSIG 96
           RS+ ++   I   P R+     LTCNALFGLGVPEL          FGPKKLPE+G+SIG
Sbjct: 40  RSLVAIGRRIRQEPTRK----PLTCNALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIG 95

Query: 97  KTLKSFQQAAKEFETELKKEPDSIGGQSEEPLAVSEQEKQETEVS 141
           KT+KSFQQAAKEFE+ELK EP+    +S +    +++E+++TEVS
Sbjct: 96  KTVKSFQQAAKEFESELKTEPEESVAESSQVATSNKEEEKKTEVS 140


>AT5G52440.1 | Symbols: HCF106 | Bacterial sec-independent
           translocation protein mttA/Hcf106 |
           chr5:21286896-21288613 FORWARD LENGTH=260
          Length = 260

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%)

Query: 41  SVAPPITTTPRRRNKGTALTCNALFGLGVPELXXXXXXXXXXFGPKKLPEVGRSIGKTLK 100
           S++P  +   ++R   + +   +LFG+G PE           FGPK L EV R++GKTL+
Sbjct: 63  SISPKSSNPEKKRRCKSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLR 122

Query: 101 SFQQAAKEFE 110
           +FQ   +E +
Sbjct: 123 TFQPTIRELQ 132