Miyakogusa Predicted Gene

Lj1g3v4957670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4957670.1 Non Chatacterized Hit- tr|I1JRL0|I1JRL0_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,88.15,0,XRN_N,Putative 5-3 exonuclease; zf-CCHC,Zinc finger,
CCHC-type; no description,Zinc finger, CCHC-typ,CUFF.33735.1
         (688 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonucleas...  1030   0.0  
AT1G75660.1 | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 | ...   554   e-158
AT5G42540.2 | Symbols: XRN2 | exoribonuclease 2 | chr5:17007513-...   530   e-150
AT5G42540.1 | Symbols: XRN2, AtXRN2 | exoribonuclease 2 | chr5:1...   530   e-150

>AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonuclease 4
           | chr1:20350300-20356650 FORWARD LENGTH=947
          Length = 947

 Score = 1030 bits (2664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/690 (72%), Positives = 557/690 (80%), Gaps = 6/690 (0%)

Query: 1   MGVPAFYRWLADRYPLSIADVVEEEPSAAGVP--FPVDVSKPNPNGMEFDNLYLDMNGII 58
           MGVPAFYRWLADRYP SI+DVVEEEP+  G     PVD+++PNPNG EFDNLYLDMNGII
Sbjct: 1   MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGII 60

Query: 59  HPCFHPDGKQAPATYDDVFRSMFDYIDHLFALVRPRKLLYLAIDGVAPRAKMNQQRSXXX 118
           HPCFHP+GK APATYDDVF+SMF+YIDHLF LVRPRK+LYLAIDGVAPRAKMNQQRS   
Sbjct: 61  HPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRF 120

Query: 119 XXXXXXXXXXXXXXXXXXXFEGEMELLPSLDKPETYDSNVITPGTPFMAVLSVALQYYIQ 178
                              FE E ++L + +K ET DSNVITPGTPFMA+LSVALQYYIQ
Sbjct: 121 RAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGTPFMAILSVALQYYIQ 180

Query: 179 TRLNNNPGWRHTKVILSDSNVPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIML 238
           +RLN+NPGWR+ KVILSDSNVPGEGEHKIM YIRLQRNLPGF+PNTRHCLYGLDADLIML
Sbjct: 181 SRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240

Query: 239 SLATHEVHFSILREVITLPGQQEKCFQCGQAGHLAAECRGKPGEKAEDWNPVDDTPIHKK 298
           SLATHEVHFSILREVIT PGQQEKCF CGQ GH A++C GK G      N   D PIHKK
Sbjct: 241 SLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSN----NAAADIPIHKK 296

Query: 299 KYQFLNIWVLREYLQYELEIPNPPFEIDFERIIDDFVFMCFFVGNDFLPHMPTLEIREGA 358
           KYQFLNIWVLREYLQYEL IP+PPF I+FERIIDDFVF+CFFVGNDFLPHMPTLEIREGA
Sbjct: 297 KYQFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGA 356

Query: 359 VNLLMHIYRKEFTSMGGYLTDAGEVSLERVEHFIQAVAIHEDQIFQKRVRIQQATXXXXX 418
           +NLLMH+YRKEFT+MGGYLTD+GEV L+RVEHFIQAVA++ED+IFQKR RI+Q+      
Sbjct: 357 INLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEE 416

Query: 419 XXXXXXXXXXXXXXXSVLDKVKLDQPGYKERYYVEKFGALELGEIDKIKKDTVLNYVEGL 478
                           + DK+KL +PGYKERYY EKF      E ++IK+D VL YVEGL
Sbjct: 417 MKQRSRRDPSEVPPEPIDDKIKLGEPGYKERYYAEKFSTTNPEETEQIKQDMVLKYVEGL 476

Query: 479 CWVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSS 538
           CWVCRYYYQGVCSWQW+YPYHYAPFASDLK+L DLEITFF+GEPFKPFDQLMGTLPA+SS
Sbjct: 477 CWVCRYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIGEPFKPFDQLMGTLPAASS 536

Query: 539 SALPEKYRDLMIDPSSPILQFYPSDFEIDMNGKRFAWQGVAKLPFINEKKLLAATRKLEG 598
           +ALP +YR LM DPSSPIL+FYP+DFE+DMNGKRFAWQG+AKLPFI EK LLAATRKLE 
Sbjct: 537 NALPGEYRKLMTDPSSPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEE 596

Query: 599 TLTEEEQLRNSVMLDFLYVSGAHYLAPYILWYYQHYSHLPLHQRPALPIDSNASGGMNGY 658
           TLT EEQ RNSVMLD LYV  AH L   IL YY  Y H+P H+     ID N+S GMNG+
Sbjct: 597 TLTVEEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHECLPWMIDPNSSQGMNGF 656

Query: 659 LWLYERNVLRTVVSSPIKGLQDVERNQVLN 688
           LW  ERN  +T V SP+ GL  +E+N+ LN
Sbjct: 657 LWFSERNGFQTRVDSPVNGLPCIEQNRALN 686


>AT1G75660.1 | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 |
           chr1:28408289-28414825 FORWARD LENGTH=1020
          Length = 1020

 Score =  554 bits (1427), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 275/413 (66%), Positives = 320/413 (77%), Gaps = 2/413 (0%)

Query: 1   MGVPAFYRWLADRYPLSIADVVEEEPSAA-GVPFPVDVSKPNPNGMEFDNLYLDMNGIIH 59
           MGVP+FYRWLA++YPL +ADV+EEEP    G+  PVD SKPNPN +E+DNLYLDMNGIIH
Sbjct: 1   MGVPSFYRWLAEKYPLLVADVIEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH 60

Query: 60  PCFHPDGKQAPATYDDVFRSMFDYIDHLFALVRPRKLLYLAIDGVAPRAKMNQQRSXXXX 119
           PCFHP+ + +P T+++VF+ MFDYID LF +VRPRKLLY+AIDGVAPRAKMNQQRS    
Sbjct: 61  PCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120

Query: 120 XXXXXXXXXXXXXXXXXXFEGEMELLPSLDKPETYDSNVITPGTPFMAVLSVALQYYIQT 179
                             FE E   LP     + +DSNVITPGT FM VLS+ALQYY+  
Sbjct: 121 SAKDASDAAAEEERLREEFEREGRRLPPKVDSQVFDSNVITPGTEFMGVLSIALQYYVHL 180

Query: 180 RLNNNPGWRHTKVILSDSNVPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIMLS 239
           RLN++ GW++ KVILSD+NVPGEGEHKIM YIRLQRNLPGF+PNTRHCLYGLDADLIML 
Sbjct: 181 RLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLG 240

Query: 240 LATHEVHFSILREVITLPGQQEKCFQCGQAGHLAAECRGKPGEKA-EDWNPVDDTPIHKK 298
           LATHEVHFSILREV+  PGQQE+CF CGQ GH A+ C GKP ++A E     D     KK
Sbjct: 241 LATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEKGDGNDFVKK 300

Query: 299 KYQFLNIWVLREYLQYELEIPNPPFEIDFERIIDDFVFMCFFVGNDFLPHMPTLEIREGA 358
            YQFL+IWVLREYL+ E+ IPNPPFEID ERI+DDF+F+CFFVGNDFLPHMPTLEIREGA
Sbjct: 301 PYQFLHIWVLREYLELEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGA 360

Query: 359 VNLLMHIYRKEFTSMGGYLTDAGEVSLERVEHFIQAVAIHEDQIFQKRVRIQQ 411
           +NLLM +Y+KEF S  GYLTD  + +L+RVE FIQAV   ED+IFQKR    Q
Sbjct: 361 INLLMAVYKKEFRSFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRAMQHQ 413



 Score =  300 bits (769), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 140/253 (55%), Positives = 183/253 (72%), Gaps = 2/253 (0%)

Query: 437 DKVKLDQPGYKERYYVEKFGALELGEIDKIKKDTVLNYVEGLCWVCRYYYQGVCSWQWYY 496
           DKVKL QPG++ERYY EKF  +   E+++++KD VL Y EGLCWV  YY +GVCSWQW+Y
Sbjct: 529 DKVKLGQPGWRERYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFY 588

Query: 497 PYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSSSALPEKYRDLMIDPSSPI 556
           PYHYAPFASDLKDL +++I F LG PFKPF+QL+G  PA+SS ALPE+YR LM DP+SPI
Sbjct: 589 PYHYAPFASDLKDLGEMDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTLMTDPNSPI 648

Query: 557 LQFYPSDFEIDMNGKRFAWQGVAKLPFINEKKLLAATRKLEGTLTEEEQLRNSVMLDFLY 616
           + FYP+DFE+DMNGKRF+WQG+AKLPFI+E++LL A  ++E TLT+EE+ RNS M D L+
Sbjct: 649 IDFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLF 708

Query: 617 VSGAHYLAPYILWYYQHYSHLPLHQRP--ALPIDSNASGGMNGYLWLYERNVLRTVVSSP 674
           ++ +H LA  +     H   L   +R    + I    S GMNGYL          V  SP
Sbjct: 709 IATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLSDGMNGYLTPCSGETHPPVFRSP 768

Query: 675 IKGLQDVERNQVL 687
           ++G++D+  NQV+
Sbjct: 769 MEGMEDILTNQVI 781


>AT5G42540.2 | Symbols: XRN2 | exoribonuclease 2 |
           chr5:17007513-17014534 FORWARD LENGTH=1023
          Length = 1023

 Score =  530 bits (1364), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/415 (60%), Positives = 313/415 (75%), Gaps = 6/415 (1%)

Query: 1   MGVPAFYRWLADRYPLSIADVVEEEP---SAAGVPFPVDVSKPNPNGMEFDNLYLDMNGI 57
           MGVP+FYRWL  RYPL+I +V+EEEP   +  GV  P+D SKPNPNG E+DNLYLDMNGI
Sbjct: 1   MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGI 60

Query: 58  IHPCFHPDGKQAPATYDDVFRSMFDYIDHLFALVRPRKLLYLAIDGVAPRAKMNQQRSXX 117
           IHPCFHP+ K +P T+ +VF+ MFDYID LF +VRPRKLL++AIDGVAPRAKMNQQR+  
Sbjct: 61  IHPCFHPEDKPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARR 120

Query: 118 XXXXXXXXXXXXXXXXXXXXFEGEMELLPSLDKPETYDSNVITPGTPFMAVLSVALQYYI 177
                               FE E + LP     + +DSNVITPGT FMA LS AL+YYI
Sbjct: 121 FRAAKDAAEAAAEEEQLREEFEREGKKLPPKVDSQVFDSNVITPGTEFMATLSFALRYYI 180

Query: 178 QTRLNNNPGWRHTKVILSDSNVPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIM 237
             RLN++PGW++ KVILSD+NVPGEGEHKIM YIR  +N PG+NPNT HCLYGLDADLIM
Sbjct: 181 HVRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIM 240

Query: 238 LSLATHEVHFSILREVITLPGQQEKCFQCGQAGHLAAECRGKPGEK-AEDWNPVDDTPIH 296
           LSLATHE+HFSILREV+  PG++ KCF CGQ GH AA+C GK   K  E  +  +   + 
Sbjct: 241 LSLATHEIHFSILREVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVVV 300

Query: 297 KKKYQFLNIWVLREYLQYELEIPNPPFEIDFERIIDDFVFMCFFVGNDFLPHMPTLEIRE 356
           KK Y+F+NIW+LREYL+++++IP     +D  R+IDDF+F+CFFVGNDFLPHMPTLEIRE
Sbjct: 301 KKPYEFVNIWILREYLEHDMQIPGAKKNLD--RLIDDFIFICFFVGNDFLPHMPTLEIRE 358

Query: 357 GAVNLLMHIYRKEFTSMGGYLTDAGEVSLERVEHFIQAVAIHEDQIFQKRVRIQQ 411
           GA+ LLM +Y+ +F S   YLTD+ +++L  VE FI+AV ++E+QIFQKR ++QQ
Sbjct: 359 GAIELLMSVYKNKFRSAKKYLTDSSKLNLRNVERFIKAVGMYENQIFQKRAQVQQ 413



 Score =  273 bits (697), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 131/264 (49%), Positives = 175/264 (66%), Gaps = 13/264 (4%)

Query: 437 DKVKLDQPGYKERYYVEKFGALELGEIDKIKKDTVLNYVEGLCWVCRYYYQGVCSWQWYY 496
           DKVKL++ G++ERYY EKF A  + E+++I++D VL Y EGLCW+  YYY GVCSW W+Y
Sbjct: 521 DKVKLNKVGWRERYYEEKFAAKSVEEMEQIRRDVVLKYTEGLCWIMHYYYHGVCSWNWFY 580

Query: 497 PYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSSSALPEKYRDLMIDPSSPI 556
           PYHYAPFASDLK L  L+I F LG PFKPF+QL+  LP++S+ ALPE YR LM +P SPI
Sbjct: 581 PYHYAPFASDLKGLEKLDIKFELGSPFKPFNQLLAVLPSASAHALPECYRSLMTNPDSPI 640

Query: 557 LQFYPSDFEIDMNGKRFAWQGVAKLPFINEKKLLAATRKLEGTLTEEEQLRNSVMLDFLY 616
             FYP+DFEIDMNGKR++WQG++KLPF+ EK+LL A  ++E +LT EE  RNS + D L+
Sbjct: 641 ADFYPADFEIDMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTNEEIRRNSALFDMLF 700

Query: 617 VSGAHYLAPYILWYYQHYSHLPLHQRPAL--PIDSN-----------ASGGMNGYLWLYE 663
           V  +H L   I       ++L   +R  +   ID              S GMNGY+    
Sbjct: 701 VVASHPLGELIRSLNSRTNNLSNEERATIIEKIDPGLSEHIQKFLDVCSDGMNGYIASCG 760

Query: 664 RNVLRTVVSSPIKGLQDVERNQVL 687
            +   +   S ++G++DV  NQV+
Sbjct: 761 GDSQPSCFCSTVEGMEDVLTNQVI 784


>AT5G42540.1 | Symbols: XRN2, AtXRN2 | exoribonuclease 2 |
           chr5:17007513-17014534 FORWARD LENGTH=1012
          Length = 1012

 Score =  530 bits (1364), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/415 (60%), Positives = 313/415 (75%), Gaps = 6/415 (1%)

Query: 1   MGVPAFYRWLADRYPLSIADVVEEEP---SAAGVPFPVDVSKPNPNGMEFDNLYLDMNGI 57
           MGVP+FYRWL  RYPL+I +V+EEEP   +  GV  P+D SKPNPNG E+DNLYLDMNGI
Sbjct: 1   MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGI 60

Query: 58  IHPCFHPDGKQAPATYDDVFRSMFDYIDHLFALVRPRKLLYLAIDGVAPRAKMNQQRSXX 117
           IHPCFHP+ K +P T+ +VF+ MFDYID LF +VRPRKLL++AIDGVAPRAKMNQQR+  
Sbjct: 61  IHPCFHPEDKPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARR 120

Query: 118 XXXXXXXXXXXXXXXXXXXXFEGEMELLPSLDKPETYDSNVITPGTPFMAVLSVALQYYI 177
                               FE E + LP     + +DSNVITPGT FMA LS AL+YYI
Sbjct: 121 FRAAKDAAEAAAEEEQLREEFEREGKKLPPKVDSQVFDSNVITPGTEFMATLSFALRYYI 180

Query: 178 QTRLNNNPGWRHTKVILSDSNVPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIM 237
             RLN++PGW++ KVILSD+NVPGEGEHKIM YIR  +N PG+NPNT HCLYGLDADLIM
Sbjct: 181 HVRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIM 240

Query: 238 LSLATHEVHFSILREVITLPGQQEKCFQCGQAGHLAAECRGKPGEK-AEDWNPVDDTPIH 296
           LSLATHE+HFSILREV+  PG++ KCF CGQ GH AA+C GK   K  E  +  +   + 
Sbjct: 241 LSLATHEIHFSILREVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVVV 300

Query: 297 KKKYQFLNIWVLREYLQYELEIPNPPFEIDFERIIDDFVFMCFFVGNDFLPHMPTLEIRE 356
           KK Y+F+NIW+LREYL+++++IP     +D  R+IDDF+F+CFFVGNDFLPHMPTLEIRE
Sbjct: 301 KKPYEFVNIWILREYLEHDMQIPGAKKNLD--RLIDDFIFICFFVGNDFLPHMPTLEIRE 358

Query: 357 GAVNLLMHIYRKEFTSMGGYLTDAGEVSLERVEHFIQAVAIHEDQIFQKRVRIQQ 411
           GA+ LLM +Y+ +F S   YLTD+ +++L  VE FI+AV ++E+QIFQKR ++QQ
Sbjct: 359 GAIELLMSVYKNKFRSAKKYLTDSSKLNLRNVERFIKAVGMYENQIFQKRAQVQQ 413



 Score =  280 bits (717), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/253 (51%), Positives = 175/253 (69%), Gaps = 2/253 (0%)

Query: 437 DKVKLDQPGYKERYYVEKFGALELGEIDKIKKDTVLNYVEGLCWVCRYYYQGVCSWQWYY 496
           DKVKL++ G++ERYY EKF A  + E+++I++D VL Y EGLCW+  YYY GVCSW W+Y
Sbjct: 521 DKVKLNKVGWRERYYEEKFAAKSVEEMEQIRRDVVLKYTEGLCWIMHYYYHGVCSWNWFY 580

Query: 497 PYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSSSALPEKYRDLMIDPSSPI 556
           PYHYAPFASDLK L  L+I F LG PFKPF+QL+  LP++S+ ALPE YR LM +P SPI
Sbjct: 581 PYHYAPFASDLKGLEKLDIKFELGSPFKPFNQLLAVLPSASAHALPECYRSLMTNPDSPI 640

Query: 557 LQFYPSDFEIDMNGKRFAWQGVAKLPFINEKKLLAATRKLEGTLTEEEQLRNSVMLDFLY 616
             FYP+DFEIDMNGKR++WQG++KLPF+ EK+LL A  ++E +LT EE  RNS + D L+
Sbjct: 641 ADFYPADFEIDMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTNEEIRRNSALFDMLF 700

Query: 617 VSGAHYLAPYILWYYQHYSHLPLHQRPAL--PIDSNASGGMNGYLWLYERNVLRTVVSSP 674
           V  +H L   I       ++L   +R  +   ID   S GMNGY+     +   +   S 
Sbjct: 701 VVASHPLGELIRSLNSRTNNLSNEERATIIEKIDPGLSDGMNGYIASCGGDSQPSCFCST 760

Query: 675 IKGLQDVERNQVL 687
           ++G++DV  NQV+
Sbjct: 761 VEGMEDVLTNQVI 773