Miyakogusa Predicted Gene

Lj1g3v4955480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4955480.1 Non Chatacterized Hit- tr|D8SA29|D8SA29_SELML
Putative uncharacterized protein OS=Selaginella
moelle,40.13,1e-18,seg,NULL; no description,NULL; SEC-C,SEC-C
motif,CUFF.33723.1
         (213 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04950.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: SEC-C moti...   226   7e-60

>AT3G04950.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: SEC-C motif
           (InterPro:IPR004027); Has 583 Blast hits to 583 proteins
           in 248 species: Archae - 0; Bacteria - 488; Metazoa - 0;
           Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes -
           61 (source: NCBI BLink). | chr3:1371786-1373300 FORWARD
           LENGTH=231
          Length = 231

 Score =  226 bits (577), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 132/191 (69%), Gaps = 2/191 (1%)

Query: 23  RSIFSTPQLQNSWVDXXXXXXXXXXXXXXXXXXXXXXXXFTLLHFADEMKKARKIGAFKD 82
           RSI ST  L N W+D                        FTLL FADE+K AR++G FK 
Sbjct: 43  RSITSTAPL-NGWMDSIKGVFTGNKDTPLEESNLPVEA-FTLLRFADELKNARRLGKFKQ 100

Query: 83  YVVGRSSEVTFTTAFEKNEAIIRFLGVLDPTGEKLQSXXXXXXXXHCNCTIIDVENALAK 142
           Y+VGRSSE TF  AFEK EA+IR+LG LD TGE LQ+        HC CTI DVEN L+K
Sbjct: 101 YIVGRSSEATFADAFEKQEAVIRYLGALDATGENLQASQKQDAAKHCKCTITDVENTLSK 160

Query: 143 FTWAKEAQKKIEKLKEEGKPMPTSIAEVQKLVGSSPLDHARSNLAQSGQISRNAPCPCGS 202
           FTWA++A KK+ +LKE GKP+P ++ E+QK++GS+P+D ARSNLA+SGQISRNA CPCGS
Sbjct: 161 FTWARQAHKKMTELKEGGKPLPKNMGELQKMMGSTPMDLARSNLAKSGQISRNALCPCGS 220

Query: 203 KKRYKRCCAKD 213
           KKRYKRCC KD
Sbjct: 221 KKRYKRCCGKD 231